Query= MSMg01no181_e10.b1 MSMg01no181_e10.b1 CHROMAT_FILE:
MSMg01no181_e10.b1 PHD_FILE: MSMg01no181_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:42 2005
(678 letters)
>mm_chr4_19993824_19994905
Length = 1082
Score = 1253 bits (648), Expect = 0.0
Identities = 666/674 (98%), Gaps = 4/674 (0%)
Strand = Plus / Minus
Query: 5 gaattctacatcttcacctgaaggctactagtggaaggctaacttccaggcagctagggt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 gaattctacatcttcatctgaaggctactagtggaaggctaacttccaggcagctagggt 978
Query: 65 aagggtcttaagcctatgcccacagtgacacacctactccaacaaggccatacctcccaa 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 977 aagggtcttaagcctatgcccacagtgacacacctactccaacaatgccatacctcccaa 918
Query: 125 tagtgccactcccagggccaagcatatacaaccataacactccctcacttttgtttcagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tagtgccactcccagggccaagcatatacaaccataacactccctcacttttgtttcagt 858
Query: 185 ctgtgctcccatcctcacagcagtgtagcacacagtcctgccccctcatgatgttccatg 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 857 ctgtgctcccatcctcacagcagtgtagcacacagtcccgccccctcatgatgttccatg 798
Query: 245 gcatgttccatgcaagccactgggcacagagctccatcttccagagccatggttctgcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gcatgttccatgcaagccactgggcacagagctccatcttccagagccatggttctgcag 738
Query: 305 tagcatcaagctcttataaccaaagccctgcctcgtgttctcctgatggaagaacacctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tagcatcaagctcttataaccaaagccctgcctcgtgttctcctgatggaagaacacctg 678
Query: 365 gtctcgtaagacagcctgctcttcacacatactgtcaaggccttgcctgtcctttttgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtctcgtaagacagcctgctcttcacacatactgtcaaggccttgcctgtcctttttgtg 618
Query: 425 ttgtagtaaggtaattttgaaaaagatcctattcttgagatgaacagattctaatgtaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttgtagtaaggtaattttgaaaaagatcctattcttgagatgaacagattctaatgtaaa 558
Query: 485 gatttaagcacacacacaca----gttgaaaactagcaaatttaacatgaccagaaaaac 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatttaagcacacacacacacacagttgaaaactagcaaatttaacatgaccagaaaaac 498
Query: 541 gaccattcaaatgttcacacatctttttttagtcaccatcaacaaaccagttttggagca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaccattcaaatgttcacacatctttttttagtcaccatcaacaaaccagttttggagca 438
Query: 601 agcaaaaggcagcagttagaggctgctaggaatttgctaagacaaacagatctatgaagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcaaaaggcagcagttagaggctgctaggaatttgctaagacaaacagatctatgaagt 378
Query: 661 tctgatccaccctg 674
||||||||||||||
Sbjct: 377 tctgatccaccctg 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1082
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1072
Effective search space: 716096
Effective search space used: 716096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_e10.g1 MSMg01no181_e10.g1 CHROMAT_FILE:
MSMg01no181_e10.g1 PHD_FILE: MSMg01no181_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:43 2005
(286 letters)
>mm_chr4_19848321_19849004
Length = 684
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 tcatctcaaagatctatctatacaaaaaaaaaaaaaatcaagggcaaagcaaggttaatc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tcatctcaaagatctatctatacaaaaaaaaaaaaa-tcaagggcaaagcaaggttaatc 259
Query: 61 tcaccttgggcatttaactctggctgtaactattcgcaactatacaagagtgaccccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcaccttgggcatttaactctggctgtaactattcgcaactatacaagagtgaccccagt 319
Query: 121 tcctctcaaccttacgaggaagccaggaaagtcactgtcagatttttttaaacatgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcctctcaaccttacgaggaagccaggaaagtcactgtcagatttttttaaacatgattt 379
Query: 181 gttcccctccacatctactaattaattccttttctaaacgttttttttcccttagtgctt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 gttcccctccacatctactaattaattccttttctaaacgttttttt-cccttagtgctt 438
Query: 241 acttacatcttctagaataatctagacatctctcaaaatgaataaa 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acttacatcttctagaataatctagacatctctcaaaatgaataaa 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
