BAC Information

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BAC

Clone NameMSMg01-181H17
Chromosome4 (Build37)
Map Location 129,188,123 - 129,188,518
singlet/doubletsinglet
Overlap genenone
Upstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik
Downstream geneMarcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181H17.T7 (MSMg01no181_h17.b1)MSMg01-181H17.TJ (MSMg01no181_h17.g1)
ACCAG374646AG374647
length809744
length of high quality
(start - end)
---471 (75 - 545)
definitionCHROMAT_FILE: MSMg01no181_h17.b1 PHD_FILE: MSMg01no181_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:57 2005CHROMAT_FILE: MSMg01no181_h17.g1 PHD_FILE: MSMg01no181_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACAAAAAATTTGCGGGGGGCAAAGGAGACAATATTCAGGAGAGAGGGGN
GGAANANAGTGGTTTACAGGAAGGGGGGGGNGNAGANGNAAGAGAAGGAG
AGGAGAGAAGGGGAAGAGTTTTTTCCCCAAAAAAAGGAGGGGAAGAAGAG
AAGAGGAGGAGGGAGAGGGGGAGGAGAGGGAGAGGAGTAGATAAGGGAGG
AGGGGGGAAAAAGAAAGGAAGGAAGAGAGGGAGGGGGGGGAGAGAGGGAA
AAGAGGGGGGGGAGAGGGAGAGATTGTAAAAGAAGAAGAGAGTGATAAAA
AAAGGGAAGGAAAAAAAAAAGAATTATTTTTTAAAGAAAAGAAGAAAAAA
AAAGGAGAGAGAGAAGGGTGAATAACGGAAACCCAGGGGAAAAAAGATAG
AAAGAAAATAAAGAAAAAAAGAAGAAAAAAGAAAATGAAAAAAGAAAAAA
CAAGGGAGAAGCGGGGGGGGAGAGAGGGGAGAGAAAAACAAGACAGAGAA
GGGAGAGAAAAAAAGAGACCGGGGAAAAAAAAAAAGAGAAAAACGAGGAA
AAAAAATAACGAAAAGAAAGGAGAGTAGTAAAAAAGAAGAGAAAGAAAAA
GATAGGGTAACGGGGGAAAGAGAAAAAAGGAGGAGAAAGAAAGAGAGAAG
GGGAGAGAAGAAAAGAAGAGAAAAAAGAGGAGAAACACGCAGGAAAAGAA
AGGGAGGAAAGAAGAAGGCGAGAAGAAAAAGCAAAGAAAGGCAGGGGAGA
GGAGGGAGAGGAAGGTGGATAGACGGAAAAGAACGAAAACGAGAAAAGGA
GAAAGGGGG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGCCTTCCTGGAAACGGCATGTTG
GTAACTGTTGGTGAGTGTATGCCCGCGAACTGGGCTGAGTGTATATGAGG
CTGAGGAAGAGACTGAAGACTGGCTATTTTTTGTGAAACTCTTCCCAGGG
GGGCTTGTGTGCATTAGGGAACCATGGAAACTGTGGTAGACTGTCCCAGT
TAACTTGAGGATCTGGAGGGGTCACTGGAGTAGAGAAAACTTCAACTGAA
GAGTTGCCTAATTCAGACTGACCTGTGGGCATGTCTCTGGGCTTCTGCTC
TGAGGCTAGAGAGGGTTCCTTGATTGCTAAGTATGTGTGCGAGCCCAGCC
CACTGTGAGTGGTACCCTCCCTAAGCAGTTGCTCTTGACTTGTGTAGGAA
AACTAACTGAGCATGCGCCAGCCAGCAAGCTGCATTCTTTGGTGGGTTTG
GCTGCAAGCCCCTGCCTGAATTCTCGCCCTGACTTGCCTCAGTTGCGGAC
CGTGACCTATGGGCTATAAGTCAAATAAACCCTTTCTTCTTCTAAATTGC
TTTTGGCCAGTGAATTGTGGGTTCTGCCCAGATGGAGGGAAAAGAGTATT
GTCTGGTATGCATTGTTAATTGATACTGGCCACTTCCCCCCAGACCCTTG
TTTACACATTTCTCATCTGTCCAGTTCTCCCAATAACACCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_h17.g1 MSMg01no181_h17.g1 CHROMAT_FILE:
MSMg01no181_h17.g1 PHD_FILE: MSMg01no181_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:57 2005
         (471 letters)



>mm_chr4_129188123_129188992
          Length = 870

 Score =  745 bits (385), Expect = 0.0
 Identities = 394/397 (99%), Gaps = 1/397 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggccttcctggaaacggcatgttggtaactgttggtgagtgtatgcccgcgaactggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 396 ttggccttcctggaaacggcatgttggtaactgttggtgagtgtatg-ctgggaactggg 338

                                                                       
Query: 61  ctgagtgtatatgaggctgaggaagagactgaagactggctattttttgtgaaactcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgagtgtatatgaggctgaggaagagactgaagactggctattttttgtgaaactcttc 278

                                                                       
Query: 121 ccaggggggcttgtgtgcattagggaaccatggaaactgtggtagactgtcccagttaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ccaggggggcttgtgtgcattagggaaccatggaaactgtggtagactgtcccagttaac 218

                                                                       
Query: 181 ttgaggatctggaggggtcactggagtagagaaaacttcaactgaagagttgcctaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttgaggatctggaggggtcactggagtagagaaaacttcaactgaagagttgcctaattc 158

                                                                       
Query: 241 agactgacctgtgggcatgtctctgggcttctgctctgaggctagagagggttccttgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agactgacctgtgggcatgtctctgggcttctgctctgaggctagagagggttccttgat 98

                                                                       
Query: 301 tgctaagtatgtgtgcgagcccagcccactgtgagtggtaccctccctaagcagttgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tgctaagtatgtgtgcgagcccagcccactgtgagtggtaccctccctaagcagttgctc 38

                                                
Query: 361 ttgacttgtgtaggaaaactaactgagcatgcgccag 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  ttgacttgtgtaggaaaactaactgagcatgcgccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space:   396460
Effective search space used:   396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)