TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGAAAAACTTCTTGACTGTGCCTCTCTCAGCAAAGCGAGGATCA
GCCAAGATTCGAGACCAACAAGCATTGCTATGCAAGCAAGCCAAGCTCAG
CCTCCTTCACTGTCCATTAAGCCCTATTTATACTCCCTTCAAACATCATG
TGTCTTTCATAAGTCTTGCCTAAACACGTGAGTCTGTCTCAGCTAATATC
ACTCTGCCAACTGGCCCAAGTCCATGGAAGCAGCAAGAGGCCACCAGCAC
ACCACCAGAAGTTTTTTTGGTGTGATTTTCTCTATGGAGTCTGGACAAAT
GGAGCTCAACTACACAACGTAAGGCAGACCAATGAATTCATATTGTTAGC
AAAGAATCATAACCCCCCTCTTCCATGTCTCTTCTTTAGCAAAACATCCT
TTCACTTCTGTCTACTTCAGAAAAACACTCCTTTACGTGTTTGCCCCAGC
AAAACACCATCCAACACAACTACTTTCCAAAGAACTGGTAAGTTTCCACT
TAAGGGCTGGGACTGGAGAGATGAATCTCTGGCTAACAGCTCTCAGCGTC
CTTCAGAGCACCCATATTTGACTCCCAGACTCCACATGATGTTTCACAAT
CTTCCCAAAATCTTTATTCCACACAACCTGTGCTGTCATCCCGCCTTTAT
GACACTCCTTTTCTGTCCCACTTCTACCCT

NCTCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGAAAATGACTGTAAAA
GCACTTGGTGATACACTGGCATCAGACACAAAAATACAATGATGTCTGCA
AAGCTTCAGGGACTAATTAAGATTTTAATGTGGTCTCATCATTAGGAAAA
TATTAAAAATTGTGATTCAAGAGGCCCTGGGTTTCACAAATTAAAACAAA
ACAACAGAGGCCATTTATTAAAGTATCTTAGGACTGAAGATTAATAAAAA
AACTTTAATTAATATATGCTGGATCATATTTTATCGTTACCAGAGAGATT
CATTAGGAAAATTAAGACTGCTGTAAACTGCCCACATTCCCAACTCTTTT
TTTTTTTTAAGTGAGCCCAAAAGGTAAAATATGGCAGCTGAGCAAGAGAA
AGAAAACAAACTGTAAATTACTTCTGCAGAAGGACGTGTTTAGTCAGATA
TTGCAAGGGTTTTGATTTTCATTGTTCATTGTAGGTTGACACCCTTGCTT
AGTAACTGCATTTAAGCAATACATACCTGGGTTGTGGGATTTTTCCACTT
NCAATAGGAGGCTAGGACTCAGAGCTTCTCAGTTACTGAGAGGATGAGAC
TAATAATGTAAGCCACTGCCATTAAACATGTACAATCTGCACCTAGATGC
CGAAG

Query= MSMg01no182_a13.g1 MSMg01no182_a13.g1 CHROMAT_FILE:
MSMg01no182_a13.g1 PHD_FILE: MSMg01no182_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:40 2005
         (542 letters)



>mm_chr4_81180654_81181596
          Length = 943

 Score =  940 bits (486), Expect = 0.0
 Identities = 501/506 (99%), Gaps = 3/506 (0%)
 Strand = Plus / Minus

                                                                       
Query: 39  ggcatcagacacaaaaatacaatgatgtctgcaaagcttcagggactaattaagatttta 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 ggcatcagacacaaaaatacaatgatgtctgcaaagcttcagggactaattaagatttta 884

                                                                       
Query: 99  atgtggtctcatcattaggaaaatattaaaaattgtgattcaagaggccctgggtttcac 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 atgtggtctcatcattaggaaaatattaaaaattgtgattcaagaggccctgggtttcac 824

                                                                       
Query: 159 aaattaaaacaaaacaacagaggccatttattaaagtatcttaggactgaagattaataa 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aaattaaaacaaaacaacagaggccatttattaaagtatcttaggactgaagattaataa 764

                                                                       
Query: 219 aaaaactttaattaatatatgctggatcatattttatcgttaccagagagattcattagg 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aaaaactttaattaatatatgctggatcatattttatcgttaccagagagattcattagg 704

                                                                       
Query: 279 aaaattaagactgctgtaaactgcccacattcccaactc-ttttttttttttaagtgagc 337
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 703 aaaattaagactgctgtaaactgcccacattcccaactctttttttttttttaagtgagg 644

                                                                       
Query: 338 ccaaaaggtaaaatatggcagctgagcaagagaaagaaaacaaactgtaaattacttctg 397
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcaaaaggtaaaatatggcagctgagcaagagaaagaaaacaaactgtaaattacttctg 584

                                                                       
Query: 398 cagaaggacgtgtttagtcagatattgcaagggttttgattttcattgttcattgtaggt 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagaaggacgtgtttagtcagatattgcaagggttttgattttcattgttcattgtaggt 524

                                                                       
Query: 458 tgacacccttgcttagtaactgcatttaagcaatacatacctgggttgtgggatttttcc 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgacacccttgcttagtaactgcatttaagcaatacatacctgggttgtgggatttttcc 464

                                     
Query: 518 acttnc-aataggaggctaggactca 542
           |||| | |||||||||||||||||||
Sbjct: 463 actt-caaataggaggctaggactca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space:   496356
Effective search space used:   496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)