BAC Information

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BAC

Clone NameMSMg01-182C01
Chromosome4 (Build37)
Map Location 25,663,633 - 25,663,985
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182C01.T7 (MSMg01no182_c01.b1)MSMg01-182C01.TJ (MSMg01no182_c01.g1)
ACCAG375097AG375098
length719752
length of high quality
(start - end)
464 (48 - 511)354 (77 - 430)
definitionCHROMAT_FILE: MSMg01no182_c01.b1 PHD_FILE: MSMg01no182_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:47 2005CHROMAT_FILE: MSMg01no182_c01.g1 PHD_FILE: MSMg01no182_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAACTGGCTTTCTCTTCTCACCAAGCAATGCTTCCAGAACAGG
GGATTGGGTTATATCTAATTGAGTTGTTGGCCAAAAGGGTCTCATGGAAA
TCTCCAAACAATCCATATTGTTGCCAAGACAATAGGTTGCACTCCACAAA
CTAACATCAAGGTCCTATTGATAAAAACAACTCCTATACAAATCATTAAA
CATGCAGAGACCAAGCTGGTGTCTACATAGAACCTTCATCTTTACATTCT
TGTGTCTTTGATATGGGAAGGCACTCACCAGGCTGCCAAGAGACATATAT
ATTGTCTAGCCACAAAACTTTTCATCTTCAATTCTGTCTTGCCTACAAAC
TATGTTAGGTTAATGATGGCACCACGCTCATGGGAGTAACCAAAAAATTT
CTGACTTGACTCAAGGCCAACCTCATGAAATGGAACCTGTACACAACACT
GCTTGTGTGACTAAAAGCCAGAGACTATATATCACATAGACTCATCTACT
TGTCTTTTAAAAGGTAGTGATAAAATGACTCTCAATGATACTCTGCTATA
CTCCTAGATTAAACACAGATCAGTATCTTATTCTGTCATCATTAGAGACA
CTTTCTCCTGCAGCCCATGTTACTACTGAGACCTTTATCCACTCACTATT
CAGTGAGATAGACATTTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAAGGAACCATCTAATACATTG
TAAATTCTACTGCAGCTAATTGGCCAAAGTTTCAATAGCACCTAAAGTGA
TTTAGAAATAAGAATTTTCTAACATTACATTCATTAATTCATTGTTTCGG
ATTCCCTTCTAGCAGACATGAGTGTGTTCATTTATCATTTAATTGACCTC
TTAGAGGTGAGTGCTGATTTTACATCCAGTTTCACAAACTACACTGTGAT
GTGCACATGGATGTATTGGCTTGAGTAGGTTTCTTAGAGCAACACAGAGG
TGTGATTTGTAGAGCAAGCATGTAATGTTTTACTCAAATTGAACTTACCT
GAAAATGGTAGGGCCCTTAATAATTTTCATCTAACAGCACTGCATAACCG
GGAATTTATAAAAATATATATTTGTGTGCACACAAAAGGGGGGGAATTTA
AATCCTTTCTGAAAGGGGTAAAAAAAAATCCTTTTGCCCCATTTTCCAGA
AAATTTTTTTAGCCCTCACTTAAAAGGAACTTTTTTTTGGGTTTTGTAGG
GGGGGGGGACAAACGCCAACCTTTTTTGACTTCAGAGGTACTTAGTAACC
ACTCCTACTTTGTTTGAAAGAGTTTAGCATTTCCTTTGGAAAAGGGTGCC
TCAGAAATTTTAAAAACCCCCTCTTTTTTGTTNNNNTTTTATTTACACAC
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_c01.g1 MSMg01no182_c01.g1 CHROMAT_FILE:
MSMg01no182_c01.g1 PHD_FILE: MSMg01no182_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:47 2005
         (354 letters)



>mm_chr4_25663433_25664185
          Length = 753

 Score =  638 bits (330), Expect = 0.0
 Identities = 348/354 (98%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaggaaccatctaatacattgtaaattctactgcagctaattggccaaagtttcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 accaaggaaccatctaatacattgtaaattctactgcagctaattggccaaagtttcaat 494

                                                                       
Query: 61  agcacctaaagtgatttagaaataagaattttctaacattacattcattaattcattgtt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 agcacctaaagtgatttagaaataagaactttctaacattacattcattaattcattgtt 434

                                                                       
Query: 121 tcggattcccttctagcagacatgagtgtgttcatttatcatttaattgacctcttagag 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 433 tcggattcccttctagcagacatgagtgtgttcatttaccatttaattgacctcctagag 374

                                                                       
Query: 181 gtgagtgctgattttacatccagtttcacaaactacactgtgatgtgcacatggatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 373 gtgagtgctgattttacatccagtttcacaaactacactgtgatgtgcacatggatggat 314

                                                                       
Query: 241 tggcttgagtaggtttcttagagcaacacagaggtgtgatttgtagagcaagcatgtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggcttgagtaggtttcttagagcaacacagaggtgtgatttgtagagcaagcatgtaat 254

                                                                 
Query: 301 gttttactcaaattgaacttacctgaaaatggtagggcccttaataattttcat 354
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 253 gttttactcaaattgaacttacctgagaatggtagggcc-ttaataattttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 753
Length adjustment: 9
Effective length of query: 345
Effective length of database: 744
Effective search space:   256680
Effective search space used:   256680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)