Query= MSMg01no182_h08.b1 MSMg01no182_h08.b1 CHROMAT_FILE:
MSMg01no182_h08.b1 PHD_FILE: MSMg01no182_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:12 2005
(380 letters)
>mm_chr4_57062878_57063657
Length = 780
Score = 518 bits (268), Expect = e-151
Identities = 335/382 (87%), Gaps = 40/382 (10%)
Strand = Plus / Minus
Query: 1 catgaactcacaacacacagcaaacacacagtggggtagacgcccactttcctttgttat 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 752 catgaactcacaacacacagcaaacacacagtggggtagaagcccactttcctttgttag 693
Query: 61 ccacaggcctcccctgtcatccacagggcaaggcagtgctacttatccgtaaagagtcaa 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccacaggcctctcctgtcatccacagggcaaggcagtgctacttatccgtaaagagtcaa 633
Query: 121 actgtctctggtcagaccttgcctctgacaacctatagctgtgtgactccggcagagtta 180
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 632 actgtctctggccagaccctgcctctgacaacctatagctgtgtgactccggcaga---- 577
Query: 181 catacgctttgtttctgcttccatgttacatacgctttgtttctgcttccatgtctagga 240
||||||||||||||||||||||||||||||||||||
Sbjct: 576 ------------------------gttacatacgctttgtttctgcttccatgtctagga 541
Query: 241 aagaaagatcgatagtctttaagtggcttttggagagtaaataagttggcagatggtaca 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagaaagatcaatagtctttaagtggcttttggagagtaaataagttggcagatggtaca 481
Query: 301 gtgttgggcattcagaaatgtcaattggagggatcccttccccccc------aaagagca 354
||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 480 gtgttgggcattcagaaatgtcaattggagggatccctt------catatttaaagagca 427
Query: 355 taataaataccttagttttttt 376
|||||||| |||||||||||||
Sbjct: 426 taataaatcccttagttttttt 405
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_h08.g1 MSMg01no182_h08.g1 CHROMAT_FILE:
MSMg01no182_h08.g1 PHD_FILE: MSMg01no182_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:12 2005
(305 letters)
>mm_chr4_57016502_57017210
Length = 709
Score = 516 bits (267), Expect = e-151
Identities = 294/305 (96%), Gaps = 4/305 (1%)
Strand = Plus / Plus
Query: 5 gaattcattaagaacattcagagtcacatagggaccagatcaactgccagttcaacttcg 64
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcattaagaacattcagggtcacatagggaccagatcaactgcccgttcaacttcg 264
Query: 65 tacagagctgccgaaggaccctcagctgcggccaggacgggtctggaggtctgtagaagg 124
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacagagctgttgaaggaccctcagctgcggccaggacgggtctggaggtctgtagaagg 324
Query: 125 cttccgtgtcttgtacttagaagaagcagccttgcgcagggatgagaaaaccgaaagcc- 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 cttccgtgtcttgtacttagaagaagcagccttgcgcagggatgagaaaaccaaaagcct 384
Query: 184 ---cgaggccttggctttggctcctgtgactaatcagctcggatatcaccatcttccctc 240
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcgaggccttggctctggctcctgtgactaatcagctcggatatcaccatcttccctc 444
Query: 241 tcaactattccctactccccagcctagaggcactctctaacagctggtcctcgttttcag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tcaactattccctactccccagcctagaggcactctctaacagctggtcctccttttcag 504
Query: 301 tcaaa 305
|||||
Sbjct: 505 tcaaa 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 709
Length adjustment: 9
Effective length of query: 296
Effective length of database: 700
Effective search space: 207200
Effective search space used: 207200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|