BAC Information

Click to search

BAC

Clone NameMSMg01-182H08
Chromosome4 (Build37)
Map Location 57,016,706 - 57,063,629
singlet/doubletdoublet
Overlap geneEpb4.1l4b
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik
Downstream genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182H08.T7 (MSMg01no182_h08.b1)MSMg01-182H08.TJ (MSMg01no182_h08.g1)
ACCAG375335AG375336
length737708
length of high quality
(start - end)
380 (75 - 454)305 (46 - 350)
definitionCHROMAT_FILE: MSMg01no182_h08.b1 PHD_FILE: MSMg01no182_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:12 2005CHROMAT_FILE: MSMg01no182_h08.g1 PHD_FILE: MSMg01no182_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,063,282 - 57,063,629)(57,016,706 - 57,017,010)
sequence
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGAACTCACAACACACAGCAAACA
CACAGTGGGGTAGACGCCCACTTTCCTTTGTTATCCACAGGCCTCCCCTG
TCATCCACAGGGCAAGGCAGTGCTACTTATCCGTAAAGAGTCAAACTGTC
TCTGGTCAGACCTTGCCTCTGACAACCTATAGCTGTGTGACTCCGGCAGA
GTTACATACGCTTTGTTTCTGCTTCCATGTTACATACGCTTTGTTTCTGC
TTCCATGTCTAGGAAAGAAAGATCGATAGTCTTTAAGTGGCTTTTGGAGA
GTAAATAAGTTGGCAGATGGTACAGTGTTGGGCATTCAGAAATGTCAATT
GGAGGGATCCCTTCCCCCCCAAAGAGCATAATAAATACCTTAGTTTTTTT
TGAGGCGACGGACTTCTGGCTGACATCTGACCCATATAACACCACGCTTG
GGTGAGGCACAGTTCTATGTGAGGAACCTGAACATGTATAGAAATGTCAT
TTCCTGTATATCTGCCCCATGGCATCCGTATAATACGACCTATTTATAAC
ATTCACCCTGGATGTTTACACGACTTTCTTTTTTTCATCCCTCCCCCCAT
TTATCCCTTCCTTTTTCCCCCTCCCACTTTTTTTTTTCCTTTCCCCCCCA
CTCTTTTTATTATTTCCCCTTTCCTCCTCTCTCTTCG
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAAGAACATTCAGAGTCACATAGGGACCAGATCAACTGCCAGT
TCAACTTCGTACAGAGCTGCCGAAGGACCCTCAGCTGCGGCCAGGACGGG
TCTGGAGGTCTGTAGAAGGCTTCCGTGTCTTGTACTTAGAAGAAGCAGCC
TTGCGCAGGGATGAGAAAACCGAAAGCCCGAGGCCTTGGCTTTGGCTCCT
GTGACTAATCAGCTCGGATATCACCATCTTCCCTCTCAACTATTCCCTAC
TCCCCAGCCTAGAGGCACTCTCTAACAGCTGGTCCTCGTTTTCAGTCAAA
GTCTTCCTAATTGCCCCACCCCCCCCTGCAGGTCTGCCCCTTCTCATGGG
CCAAGCTTCCACCACCCACATAAATTACGGTTTCCATATGAAAGGGACAC
CCGAATGGTTCCCATGCTGAAGGCTTGGTCCTGTGTGGCTGGACCCTGAG
AGCAGGGACTAACTTGTTAACAAGCTCACAGCTGAGTGGGCTACTGGGGA
GTGCCGGCTCAGTGCAGTAAGTGTTTTTTTGCCCCATCTTTCCCTGTCTT
TTATCCCCCCTCTTTTATTCTCATTCCCTTATTACCAGCGCTCACCTTTC
TTCTTACTTCCCCCCCCCCCGCAATTGACACATTTTTTTTCTTTTTTTTG
TTTACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_h08.b1 MSMg01no182_h08.b1 CHROMAT_FILE:
MSMg01no182_h08.b1 PHD_FILE: MSMg01no182_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:12 2005
         (380 letters)



>mm_chr4_57062878_57063657
          Length = 780

 Score =  518 bits (268), Expect = e-151
 Identities = 335/382 (87%), Gaps = 40/382 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaactcacaacacacagcaaacacacagtggggtagacgcccactttcctttgttat 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 752 catgaactcacaacacacagcaaacacacagtggggtagaagcccactttcctttgttag 693

                                                                       
Query: 61  ccacaggcctcccctgtcatccacagggcaaggcagtgctacttatccgtaaagagtcaa 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccacaggcctctcctgtcatccacagggcaaggcagtgctacttatccgtaaagagtcaa 633

                                                                       
Query: 121 actgtctctggtcagaccttgcctctgacaacctatagctgtgtgactccggcagagtta 180
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
Sbjct: 632 actgtctctggccagaccctgcctctgacaacctatagctgtgtgactccggcaga---- 577

                                                                       
Query: 181 catacgctttgtttctgcttccatgttacatacgctttgtttctgcttccatgtctagga 240
                                   ||||||||||||||||||||||||||||||||||||
Sbjct: 576 ------------------------gttacatacgctttgtttctgcttccatgtctagga 541

                                                                       
Query: 241 aagaaagatcgatagtctttaagtggcttttggagagtaaataagttggcagatggtaca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aagaaagatcaatagtctttaagtggcttttggagagtaaataagttggcagatggtaca 481

                                                                       
Query: 301 gtgttgggcattcagaaatgtcaattggagggatcccttccccccc------aaagagca 354
           |||||||||||||||||||||||||||||||||||||||      |      ||||||||
Sbjct: 480 gtgttgggcattcagaaatgtcaattggagggatccctt------catatttaaagagca 427

                                 
Query: 355 taataaataccttagttttttt 376
           |||||||| |||||||||||||
Sbjct: 426 taataaatcccttagttttttt 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no182_h08.g1 MSMg01no182_h08.g1 CHROMAT_FILE:
MSMg01no182_h08.g1 PHD_FILE: MSMg01no182_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:12 2005
         (305 letters)



>mm_chr4_57016502_57017210
          Length = 709

 Score =  516 bits (267), Expect = e-151
 Identities = 294/305 (96%), Gaps = 4/305 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaagaacattcagagtcacatagggaccagatcaactgccagttcaacttcg 64
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcattaagaacattcagggtcacatagggaccagatcaactgcccgttcaacttcg 264

                                                                       
Query: 65  tacagagctgccgaaggaccctcagctgcggccaggacgggtctggaggtctgtagaagg 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacagagctgttgaaggaccctcagctgcggccaggacgggtctggaggtctgtagaagg 324

                                                                       
Query: 125 cttccgtgtcttgtacttagaagaagcagccttgcgcagggatgagaaaaccgaaagcc- 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 325 cttccgtgtcttgtacttagaagaagcagccttgcgcagggatgagaaaaccaaaagcct 384

                                                                       
Query: 184 ---cgaggccttggctttggctcctgtgactaatcagctcggatatcaccatcttccctc 240
              ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcgaggccttggctctggctcctgtgactaatcagctcggatatcaccatcttccctc 444

                                                                       
Query: 241 tcaactattccctactccccagcctagaggcactctctaacagctggtcctcgttttcag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tcaactattccctactccccagcctagaggcactctctaacagctggtcctccttttcag 504

                
Query: 301 tcaaa 305
           |||||
Sbjct: 505 tcaaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 709
Length adjustment: 9
Effective length of query: 296
Effective length of database: 700
Effective search space:   207200
Effective search space used:   207200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)