Query= MSMg01no184_a01.b1 MSMg01no184_a01.b1 CHROMAT_FILE:
MSMg01no184_a01.b1 PHD_FILE: MSMg01no184_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:10 2005
(419 letters)
>mm_chr4_91603663_91604481
Length = 819
Score = 731 bits (378), Expect = 0.0
Identities = 392/404 (97%), Gaps = 12/404 (2%)
Strand = Plus / Plus
Query: 16 gaattcctagaactgctaagatcaacccatctacctctgtattttagtttccatggaggg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcctagaactgctaagatcaacccatctacctctgtattttagtttccatggaggg 275
Query: 76 ctgctcattagtcctatgcctgtaccactgactgttagttgtagtctgttttctgaacaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctgctcattagtcctatgcctgtaccactgactgttagttgtagtctgttttctgaacaa 335
Query: 136 cagatatagtcaacacatctttgtaaaactttctggctgctaatggttgaaggtcagaat 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagatatagtcaacacatctttgtaaaactttctggctgctaatggttgaaggtcagaat 395
Query: 196 tctcctaaagagccaacatactatattacttatagtttagtgtgtgttattatctatcta 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctcctaaagagccaacatactatattacttatagtttagtgtgtgttattatctatcta 455
Query: 256 tctatctatctatctatctatctatctatctatctatctatctattagcatattaattat 315
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 456 tctatctatctatctatctatctatctatctat------------tagcatattaattat 503
Query: 316 ttgacactaggtcttattatgttgtacaggctgatctcataaccatgtactcaggaggct 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgacactaggtcttattatgttgtacaggctgatctcataaccatgtactcaggaggct 563
Query: 376 cctgtctcagtctcccatgtgctgtgattacaaatatgtgccat 419
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctgtctcagtctcccatgtgctgtgattacaaatatgtgccat 607
Score = 97.4 bits (50), Expect = 2e-24
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 247 atctatctatctatctatctatctatctatctatctatctatctatctat 296
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctatctatctatctatctatctatctatctatctatctatctatctat 110
Score = 97.4 bits (50), Expect = 2e-24
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 251 atctatctatctatctatctatctatctatctatctatctatctatctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctatctatctatctatctatctatctatctatctatctatctatctat 110
Score = 91.6 bits (47), Expect = 9e-23
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 246 tatctatctatctatctatctatctatctatctatctatctatctat 292
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tatctatctatctatctatctatctatctatctatctatctatctat 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 8
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_a01.g1 MSMg01no184_a01.g1 CHROMAT_FILE:
MSMg01no184_a01.g1 PHD_FILE: MSMg01no184_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:10 2005
(286 letters)
>mm_chr4_91792668_91793351
Length = 684
Score = 491 bits (254), Expect = e-143
Identities = 279/290 (96%), Gaps = 6/290 (2%)
Strand = Plus / Minus
Query: 1 tcacctgcagaacaatatacatgctcaagaggcatgctttatggactctcagatacaagc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tcacctgcagaacaatacacatgctcaagaggcatgctttatggactctcagatacaagc 416
Query: 61 tttctccagcagctatgtaactccagaaacaatctcactgactggcatgcaacagacaac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttctccagcagctatgtaactccagaaacaatctcactgactggcatgcaacagacaat 356
Query: 121 tggaaagtactaaattaaatgaaaacatatcaatcatatatatgagaatgttgacaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggaaagtactaaattaaatgaaaacatatcaatcatatatatgagaatgttgacaaacc 296
Query: 181 cctgcagtgctgcctttagaagtaacttaactgctggtgtatggggggtctcataaatgc 240
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 295 cctgcagtggtgcctttagaagtaacttaagtgctggtgtatggggggtctcataaatgc 236
Query: 241 attttttttttctgagccact----catacatacatacatatttctcata 286
| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 235 a--ttttttttctgagccactcatacatacatacatacacatttctcata 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
