BAC Information

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BAC

Clone NameMSMg01-184B18
Chromosome4 (Build37)
Map Location 146,803,474 - 146,804,161
singlet/doubletsinglet
Overlap geneLOC627701
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184B18.T7 (MSMg01no184_b18.b1)MSMg01-184B18.TJ (MSMg01no184_b18.g1)
ACCAG376493AG376494
length749765
length of high quality
(start - end)		692 (58 - 749)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no184_b18.b1 PHD_FILE: MSMg01no184_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:20 2005CHROMAT_FILE: MSMg01no184_b18.g1 PHD_FILE: MSMg01no184_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCAAAAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCATGACTCTCAAACGCTTTATTTGGTAAAGTCAA
GATTCTAATCTTAAAGATTAAATGATATTTATGCCAATTATATTTCTAGT
TATAGTTTCTTTTCTCTCTTCAAACAGAAGAGACCAAACTTTCAGCCACT
CTTCCTAAATGCACACTGATTCCAATCCAGTTGCTGTTAAAAATAACTAA
AAATATAAGTAACACATACACACACACTAATTTTAAAAACTACACCTCTT
CTGCTTGCAAAAAGATAATATTATCTTTTGCTTATGTTCATCAGTCTCAT
CATTCCTCCCCTACAATGTTCATGGGGACCCAGAGCCTGCTAAGAATATT
CTTTCCTCACAGCTGACTATAGAGTTCCAAGTCTACAACCAGCCTATATA
CCTAAGGTTAAAAGATTATCATGAAACAAAAATTGGAAAGCTTGTAAAAT
CCAGAGAGTCAGAATGTCTGATGTGAGATTGTGTTTACTACATGTTATAG
CAGTGGTTATCAACCTGTTGGTCACGACCTCTTTGGGGGCAATCCTTTCA
CAGATGTTGCCTAAAGCCATCATAAAACACAGATATGTACATTATTACAG
TTCATAACAGTAGCAAAATTGCAGTTATGAAGAAGCAACAAAAACAATTT
TATGGTTAGAGATCACCACAGCCATATTGAAGAACTGCAACATTAGGAG

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGATTATTAAGATGGGATT
TTTGGTTAAAGCATTTGTCACATTTACTACATTTGTAAGATTTCTCTCCT
GTATGAATTTTCTGATGCCTTCTCAAATTGCCTTTTTCAGTAAAGCATTT
GTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGAT
GAATACTAATTTCGAGTTTTCGGGTAAAGCATTTTTTACATTCACTACAT
TTATAAGGTTTCTCTCCTTTATGAATTCTCGGATGAATATTAAGATAAGA
TTTTTGGTTATATCACTTATCACATTCATGACATTTGTAAGGTTTCTCTC
CTGAATGAATTCCCCGATGAATTCTCAAATTGCCTTTTTCAGTAAAGCAT
TTGTCACATTCACTGCATTAGTAAAGTTACTCTCCATTAAAGAATTATCT
AAAGTCTTCTCACACAGCCTTTAATATTTTATCATACCTCACATTCTACA
TTTATGTTAAGTTCACCCTCAATTAAGTATTTCTTTATGATTTTTTATAT
ATACATTTTTCTTATAAATACAATAAGTACCAATTACACATAAATTATAA
TAATTTTAATCCCCCAAACCCAAGTTTTACTTATTTCTTCCTTATATGTA
AACACATATCGAGATTTTCTAAATTAAACTCATCTATCATTTATTATTTA
CACATATTTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_b18.b1 MSMg01no184_b18.b1 CHROMAT_FILE:
MSMg01no184_b18.b1 PHD_FILE: MSMg01no184_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:20 2005
         (692 letters)



>mm_chr4_146803270_146804361
          Length = 1092

 Score = 1315 bits (680), Expect = 0.0
 Identities = 686/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgactctcaaacgctttatttggtaaagtcaagattctaatcttaaagattaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgactctcaaacgctttatttggtaaagtcaagattctaatcttaaagattaa 264

                                                                       
Query: 65  atgatatttatgccaattatatttctagttatagtttcttttctctcttcaaacagaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatatttatgccaattatatttctagttatagtttcttttctctcttcaaacagaaga 324

                                                                       
Query: 125 gaccaaactttcagccactcttcctaaatgcacactgattccaatccagttgctgttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaccaaactttcagccactcttcctaaatgcacactgattccaatccagttgctgttaaa 384

                                                                       
Query: 185 aataactaaaaatataagtaacacatacacacacactaattttaaaaactacacctcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataactaaaaatataagtaacacatacacacacactaattttaaaaactacacctcttc 444

                                                                       
Query: 245 tgcttgcaaaaagataatattatcttttgcttatgttcatcagtctcatcattcctcccc 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 tgcttgcaaaaagataatattatcttttgcttatgttcagcagtctcatcattcctcccc 504

                                                                       
Query: 305 tacaatgttcatggggacccagagcctgctaagaatattctttcctcacagctgactata 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 tacaatgttcatggggacccagagtctgctaagaatattctttcctcacagctgactata 564

                                                                       
Query: 365 gagttccaagtctacaaccagcctatatacctaaggttaaaagattatcatgaaacaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagttccaagtctacaaccagcctatatacctaaggttaaaagattatcatgaaacaaaa 624

                                                                       
Query: 425 attggaaagcttgtaaaatccagagagtcagaatgtctgatgtgagattgtgtttactac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attggaaagcttgtaaaatccagagagtcagaatgtctgatgtgagattgtgtttactac 684

                                                                       
Query: 485 atgttatagcagtggttatcaacctgttggtcacgacctctttgggggcaatcctttcac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgttatagcagtggttatcaacctgttggtcacgacctctttgggggcaatcctttcac 744

                                                                       
Query: 545 agatgttgcctaaagccatcataaaacacagatatgtacattattacagttcataacagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agatgttgcctaaagccatcataaaacacagatatgtacattattacagttcataacagt 804

                                                                       
Query: 605 agcaaaattgcagttatgaagaagcaacaaaaacaattttatggttagagatcaccacag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agcaaaattgcagttatgaagaagcaacaaaaacaattttatggttagagatcaccacag 864

                                       
Query: 665 ccatattgaagaactgcaacattaggag 692
           ||||||||||||||||||||||||||||
Sbjct: 865 ccatattgaagaactgcaacattaggag 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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