Query= MSMg01no184_d15.b1 MSMg01no184_d15.b1 CHROMAT_FILE:
MSMg01no184_d15.b1 PHD_FILE: MSMg01no184_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:30 2005
(318 letters)
>mm_chr4_122403253_122403970
Length = 718
Score = 580 bits (300), Expect = e-170
Identities = 306/308 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttcagtgcagaggactaaccaaggaaggctgaggaggagaaaataaaggaggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcagtgcagaggactaaccaaggaaggctgaggaggagaaaataaaggaggt 263
Query: 64 tcaaagaaaaactggaaccaactcagggacaactcaggtgggattagcctagatgttctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaagaaaaactggaaccaactcagggacaactcaggtgggattagcctagatgttctg 323
Query: 124 ttgttttacatgctctctgggttgcaagagggtcctgtgtaccaagctcctgtcccagta 183
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgttgtacatgctctctgggttgcaagagggtcctgtgtaccaagctcctgtcccagta 383
Query: 184 caatgttaggaaatcatgtggaaatgaagtcaggagactggactcaatgtgcaggcaggt 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 caatgttaggaaatcatgtggaaatgaagtcaggagactggactcaaagtgcaggcaggt 443
Query: 244 ttatttcagagaacctgagaagagctcacattaagcaagtatgtttttcttacagacaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttatttcagagaacctgagaagagctcacattaagcaagtatgtttttcttacagacaag 503
Query: 304 agaccttt 311
||||||||
Sbjct: 504 agaccttt 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_d15.g1 MSMg01no184_d15.g1 CHROMAT_FILE:
MSMg01no184_d15.g1 PHD_FILE: MSMg01no184_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:30 2005
(282 letters)
>mm_chr4_122518176_122518861
Length = 686
Score = 441 bits (228), Expect = e-128
Identities = 272/294 (92%), Gaps = 14/294 (4%)
Strand = Plus / Minus
Query: 1 agtttcagacccatgttgggtgcctcacaaccacctataactacagcaccagggatccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtttcagacccatgttgggtgcctcacaaccacctataactacagcaccagggatccaa 567
Query: 61 tgatgccctcttctaatcaatatctctctctctctctctctctctctctctctctctctc 120
|||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 tgataccctcttctaatca--atctttctctctctctctctctctctctctctctctctc 509
Query: 121 tctctctctctctcacacaca--------ccccaattttccttaatcttaaaaaata--- 169
|||| | | | | |||||||| ||||||||||||||||||||||||||||
Sbjct: 508 tctcacacacacacacacacacacacactccccaattttccttaatcttaaaaaataaat 449
Query: 170 -gagaaaagatgcaaagatacttgcctaagatagaaaatggtcaacagaatcactgttga 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgagaaaagatgcaaagatacttgcctaagatagaaaatggtcaacagaatcactgttga 389
Query: 229 caaaatgcaagctaaaacgatgaactgtcaatccatacccacctagactgctta 282
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 388 caaaatgcaagctaaaacgatgaactgttaatccatacccacctagactgctta 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 686
Length adjustment: 9
Effective length of query: 273
Effective length of database: 677
Effective search space: 184821
Effective search space used: 184821
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
