Query= MSMg01no184_h20.b1 MSMg01no184_h20.b1 CHROMAT_FILE:
MSMg01no184_h20.b1 PHD_FILE: MSMg01no184_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:53 2005
(310 letters)
>mm_chr4_100135934_100136643
Length = 710
Score = 572 bits (296), Expect = e-168
Identities = 305/308 (99%), Gaps = 2/308 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagccccctttcaaactcatggaagtgtggcagaactccatgtcttgaagttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagccccctttcaaactcatggaagtgtggcagaactccatgtcttgaagttg 263
Query: 64 gtgggcagctgtttccagtagctccttgagattcttggatgctgcccacaccatcaccca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgggcagctgtttccagtagctccttgagattcttggatgctgcccacaccatcaccca 323
Query: 124 gcctcttccattcccagtactagcaactgggaatctgccaggcacggattccactgcatc 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcctcttccatttccagtactagcaactgggaatctgccaggcacggattccactgcatc 383
Query: 184 ttctggaccacagatttctggaagaccctagtcccattagggctgacttgagtcttttat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctggaccacagatttctggaagaccctagtcccattagggctgacttgagtcttttat 443
Query: 244 gctcacaccacaaaaatgtc-tcctctcaaaggcaagtgtcccctttaacttaaccacag 302
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctcacaccacaaaaat-tcctcctctcaaaggcaagtgtcccctttaacttaaccacag 502
Query: 303 aacaaagc 310
||||||||
Sbjct: 503 aacaaagc 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no184_h20.g1 MSMg01no184_h20.g1 CHROMAT_FILE:
MSMg01no184_h20.g1 PHD_FILE: MSMg01no184_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:53 2005
(282 letters)
>mm_chr4_100309419_100310101
Length = 683
Score = 478 bits (247), Expect = e-139
Identities = 274/283 (96%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 tgtgtacagatagcttgtcccaaatccaaagagaaaaaggcaggaaccatgggccaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtgtacagatagcttgtcccaaatccaaagagaaaaaggcaggaaccatgggccaattc 424
Query: 61 agggtgcctttactaactacttgaccatagtgaatagtcaaactcttgctagcaagagat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agggtgccttaactaactacttgaccatagtgaatagtcaaactcttgctagcaagagat 364
Query: 121 attaggcaccagggccacaggaataaatacgatgcagtctgtgctcaagaggaactaagt 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 363 attaggcaccagggccacaggaatgaatacgatgcagtctgtgctcaagaggaagtaagt 304
Query: 181 gtgagcggtgagtatataagcaaaatac-ataatgaagttatagtccactctggtaaaag 239
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 303 gtgagcggtgagtatataagcaaaatacaattatgaagttatagtccactctggtataag 244
Query: 240 gtaaggcatgagtccagacattgtcttgagattggtgtgggca 282
||||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 243 gtaagacatgagtccagacattggctggagattggtgtgggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space: 184002
Effective search space used: 184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
