BAC Information

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BAC

Clone NameMSMg01-184I03
Chromosome4 (Build37)
Map Location 16,403,858 - 16,404,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184I03.T7 (MSMg01no184_i03.b1)MSMg01-184I03.TJ (MSMg01no184_i03.g1)
ACCAG376772AG376773
length1,200697
length of high quality
(start - end)
417 (28 - 444)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no184_i03.b1 PHD_FILE: MSMg01no184_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:54 2005CHROMAT_FILE: MSMg01no184_i03.g1 PHD_FILE: MSMg01no184_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCATTGGGCCTAACNATCCTAAGGGAGAGGATCCGCGGAATTCTC
TGTTCCCCATTTTTAAGTACATTTATTTGGTTCTCTGGAGTCTAACTTCT
TGAGTTCTTTGTATATTCCATTGATCTACATGACTGTCTCTATACCAATA
CCATGCAGTTTTCATGAAGATTGCTTTGCAATACAGCTTGGGATCAGGGA
TGTTGATTCTCTCAGAACTTCTTTTATTATTGAGAATAGTTTTCCCAATC
CTTGGTTTTCGCTTATTACACATGAATATTCAGATTGCTCTTTCTAACTC
TATGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGA
TTTCTCTTGGGAAGATAGCCTATATTAATTCTACCAATCCATGATTTTGA
AAGATCTTTCCATCTTCTGAGATCTTTGATTTCTTTCTTCAGATTTTTTT
TTTTCCCCCCCCCCAGATCTTTCACTTTCTTAAAAAAAAAAGGGGGGGGG
GTATTTTATATTGTTTGTGACTATTGTGAAGGGTGTTGTTTTATGGTGAA
ATGTTTTATAGATATCTGTTAAATCCATTTGGTACATCAGAATACATTTA
ATGTATGTGTTCATCCATGAGTTAAATGTTTCTCCAGATCTACTCAGGTC
CAGACATTATGCTCAGGGTCAAGGATTCTATTGTGTAACAATTTACAAAA
GACTTTTTTTTCATTTTTTTAATTTTTAAAAAATTTTTTTATTTTTTTAC
GTATATTCCTTCCTTTACATTTTCCAAAGCTTTTCCCAAAAAATCCTCCT
TTTTGTTTTCCCTTTTATTCATTCTTCTTCTTTTTATTATTTTCTACTTT
TTTGTACCTGTTTTTTCCTTGTTTCGATGATTTTTTACATCTATAGATCC
TATGACTTTCTTTTTTCCCATGTTCGCCCTCTTTTCGTATCTCTTTTATT
TTCTTAGCTACTCTAATTTCTTAACTTTATATTTTTTCTTCTACTTTTCT
ATTTGCTTTTTCCCCTTATTTTTTCTCCCTATCTTTCTTTTTTTTTTTCT
TATATTTTTTTTTTTTCATCCTCTTATTCTATTTTCTTTCTTCATTCCAT
ATTCTATTATTCTATTTTCTCTTACTCTTATTTTTTTTCTTATTCTTCCT
CTTATCTTTATTTCTATATTTATATCTCTTTATTCATTAATCTTTTCTTA

CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACTTTTACCTTGTAAGACTTGACA
ACTGTTCCAAATGCATGCCATCAACTGGCACTGATGTAACCTGACAGCAA
GACTCTTTTTGCTAATAGCAAGCACTGCTTGTAGAAGGGCTTCTGATCGC
TAAGCTCTTACTACCTAACAACCATGGAATTCAGTGAATGTTTGAAACTT
GCAACCATTGCCCAGTCAAATGCACTGAACACAGACCTATGCAATGTACA
AGAAAATGGTTATAACAAATAACACATTTCTGCTTTATGGGGCAACCTGG
CTTCAATTAAAGCCCATGCGCCCACCGCTAAATGATATAATTAATAACAG
TGATCAAGGCTGAAATATTTCAAACGATCACCTTCATTTTATACTTCTTA
GAAGGACAGAACCTTAAAAAGCAAGAACACAAGTTACATCCGTCTATATC
TCTATGCAGAGAAGTCCACATATTTCTGCCTACAACACATTCAATTGTAA
AGGGGATTATTTACTTAAGCCAGAAACTCAATAGGAAGTTGATCAAGATC
AGAAGAATTATCAGTGTTGACCATATTAGCGGCTCTTCTGTTGATGTGCT
AAAACACCATAACCAAGGCAACTTATAAAAAGATCTTATTTTAACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_i03.g1 MSMg01no184_i03.g1 CHROMAT_FILE:
MSMg01no184_i03.g1 PHD_FILE: MSMg01no184_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:54 2005
         (288 letters)



>mm_chr4_16403658_16404345
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacttttaccttgtaagacttgacaactgttccaaatgcatgccatcaactggcactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 caacttttaccttgtaagacttgacaactgttccaaatgcatgccatcaactggcactga 429

                                                                       
Query: 61  tgtaacctgacagcaagactctttttgctaatagcaagcactgcttgtagaagggcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgtaacctgacagcaagactctttttgctaatagcaagcactgcttgtagaagggcttct 369

                                                                       
Query: 121 gatcgctaagctcttactacctaacaaccatggaattcagtgaatgtttgaaacttgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatcgctaagctcttactacctaacaaccatggaattcagtgaatgtttgaaacttgcaa 309

                                                                       
Query: 181 ccattgcccagtcaaatgcactgaacacagacctatgcaatgtacaagaaaatggttata 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ccattgcccagtcaaattcactgaacacagacctatgcaatgtacaagaaaatggttata 249

                                                           
Query: 241 acaaataacacatttctgctttatggggcaacctggcttcaattaaag 288
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acaaatagcacatttctgctttatggggcaacctggcttcaattaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)