BAC Information

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BAC

Clone NameMSMg01-184L18
Chromosome4 (Build37)
Map Location 36,512,517 - 36,512,806
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184L18.T7 (MSMg01no184_l18.b1)MSMg01-184L18.TJ (MSMg01no184_l18.g1)
ACCAG376932AG376933
length739739
length of high quality
(start - end)
313 (57 - 369)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no184_l18.b1 PHD_FILE: MSMg01no184_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:14 2005CHROMAT_FILE: MSMg01no184_l18.g1 PHD_FILE: MSMg01no184_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNGGATCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCTCCTGTGGAGCAGGCCTCAGATTCACTCAAGA
GAACAGTTGATTGCCCCTATTAATAATCTTACCACTGTGGCAAGCGGGTA
CATCCTTCCTGGTAGGTCATTATTGCAGCATGCAGGGAACAGCACTGCAT
AACAGCATAGATATAATTTCTTCCCATGTAGTCTACATTGAACTTTCCAG
CCTCCATGAAAGTTCATTAGTGGTGAGTTTCCTGGCCCGTTCAAGATCGA
TCTCTCTATGTCCTACACCAAAGTGTGTAGTGCCTCCAGCAATAGGGTTT
AATTATCTAATTATGATTTNAATTTCTGCCCCCCCACCCGCACTAGCAAT
ATCCTGTTTTCTTTAGGTGCCTTTTGGGACTTAAAGACAAATAATTCATG
GGGTGGTTACCTGTGCCTAAACGTTGGAATTTTTATCAATAACCCCAGGT
TTTCTGGGAACACCATAATTTTTCTGTATTAGTTAATCATCAGAGCCACC
AAAATGCTTTAATGTCTCATTAAGGAATGATAACAAAGCCACATCCCTTA
ATAATTAATTTTGAAAAAACAAAGCCCCAAATTTGAAATTCCTTCCACAC
CCCTTTCCGGGGGTCCTTTGGGCAAAAGCTTTTTGGGGAAACCGGGGCCC
GCCCCGGTGGGCCCGGCCCGGGTGAAAAAAAGAAAAAAA
ACATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTGATTTCTCTTTTTCCTTTTAGC
TCTTTTCATCTTCTTCCTTCTCTCATTACATCAGAAGAAACATAAAGTGT
TCCACTATTTCTGAAATATGAAACTTATCTTCATTTCATTTACTTGTTTA
GTTTAGTATTTGTGTGTCCTTTGTAAAATCCAATTCATGATGTTAGTAAT
AATTTATATTGACATAAACGCACATTGCTAACACAAAACTCTTGATGATA
TTATGATTAATCAATAAGCTAAAATTTAGGAATAAAGTAGGTCATACAAA
TTAATATATAGTATTGTACATACCCACCCTTTAGCTAGCTAAAAAAGTTG
AGAAATTTTTGATGCCAGAATTACTTGACATCCAAAAGTATCAGCCATCA
GGGAGAAAATGAGGTTGATCAGTGGTGATTTTCCTCCAGAGGCCAGGCAC
TAAAATGCTCTGCATCATTTATAATTGCTTCTGACAGTAGAAGAAAAAGC
CAACCATTTAAGATGGCAACAGTTGGATGTTTGTTTCACATCTGGAAACT
AATACAATAAGATAATCACATTTAAAAGTCTGGCATTGTTTTAGGAAGCT
TTTCTAAACTCATTGCATTTGATGAAATACCTCCCATAAGTTAGATCATA
AAATACCCTTAGATAGTAAAATATTCCCTCCATTCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_l18.g1 MSMg01no184_l18.g1 CHROMAT_FILE:
MSMg01no184_l18.g1 PHD_FILE: MSMg01no184_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:14 2005
         (290 letters)



>mm_chr4_36512317_36513006
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgatttctctttttccttttagctcttttcatcttcttccttctctcattacatca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgatttctcgttttccttttagctcttttcatcttcttccttctctcattacatca 260

                                                                       
Query: 61  gaagaaacataaagtgttccactatttctgaaatatgaaacttatcttcatttcatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaaacataaagtgttccactatttctgaaatatgaaacttatcttcatttcatttac 320

                                                                       
Query: 121 ttgtttagtttagtatttgtgtgtcctttgtaaaatccaattcatgatgttagtaataat 180
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ttgcttagtttagtatttgtgtgtcctttgtaaaatccaattcatcatgttagtaataat 380

                                                                       
Query: 181 ttatattgacataaacgcacattgctaacacaaaactcttgatgatattatgattaatca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatattgacataaacgcacattgttaacacaaaactcttgatgatattatgattaatca 440

                                                             
Query: 241 ataagctaaaatttaggaataaagtaggtcatacaaattaatatatagta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagctaaaatttaggaataaagtaggtcatacaaattaatatatagta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)