Query= MSMg01no185_m24.b1 MSMg01no185_m24.b1 CHROMAT_FILE:
MSMg01no185_m24.b1 PHD_FILE: MSMg01no185_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:37 2005
(312 letters)
>mm_chr4_78242611_78243322
Length = 712
Score = 553 bits (286), Expect = e-162
Identities = 301/306 (98%)
Strand = Plus / Plus
Query: 5 gaattcacacactccacaggtgtgcttctgtcttgatgatcaacattagtatgggatttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacacactccacaggtgtgcttctgtcttgatgatcaacattagtatgggatttt 264
Query: 65 aagacagggccataggaattatgaatctggggctcttagttttgggctgtggatttttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagacagggccataggaattatgaatctggggctcttagttttgggctgtggatttttta 324
Query: 125 aactaaccctgtcattccaagagtttctatttccactcacaaaatgtggatttttctttt 184
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 aactaacgctgtcattccaagagtttctatttccacacacaaaatgtggatttttctttt 384
Query: 185 aaatgatacctaccttagtattgttgtcttaaaggagacagagccacaaagactcatagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgatacctaccttagtattgttgtcttaaaggagacagagccacaaagactcatagt 444
Query: 245 ccactgcctttgtcatactaagtggctagatgttgcttaattgagagaggaactataaag 304
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 445 ccactgcctttgtcatactacgtggctagatgttgcttaattgatagaggaactataaag 504
Query: 305 ccatgt 310
| ||||
Sbjct: 505 ctatgt 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_m24.g1 MSMg01no185_m24.g1 CHROMAT_FILE:
MSMg01no185_m24.g1 PHD_FILE: MSMg01no185_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:37 2005
(565 letters)
>mm_chr4_78407872_78408837
Length = 966
Score = 1031 bits (533), Expect = 0.0
Identities = 556/565 (98%), Gaps = 3/565 (0%)
Strand = Plus / Minus
Query: 1 tttatacagaacctgaccaaaggaaaacaaaaaaatataacaggacagtagcagctagag 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 645 tttatacagaacctgaccaaaggaaaacaaaaaagtataacaggacagtagcagctagag 586
Query: 61 agtctcttcttctcaggaaacattttaccctcattcatgggaggaagacatatgttaatt 120
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 585 agtcacttcttctcaggaaacattttaccctcactcatgggaggaagacatatgttcatt 526
Query: 121 tgttgatgagaatgattgaaacatggataaatttgtttcagaaaagattatcaatctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgttgatgagaatgattgaaacatggataaatttgtttcagaaaagattatcaatctcag 466
Query: 181 aaaaactggaaaacagtaactctaattaaatgacagaattaggatctattgcaaaagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaaaactggaaaacagtaactctaattaaatgacagaattaggatctattgcaaaagaac 406
Query: 241 aaaatggcccttgactaggaacatttagtgcatgatatacatggaaggctgaagagatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaaatggcccttgactaggaacatttagtgcatgatatacatggaaggctgaagagatgg 346
Query: 301 taatatatatttcaatggatattggtatgagggattacctcctaaaggaaaccacagaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taatatatatttcaatggatattggtatgagggattacctcctaaaggaaaccacagaaa 286
Query: 361 tactctttggatttgtattgaagaacttaagtaattttagtaaatcactctgaatcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tactctttggatttgtattgaagaacttaagtaattttagtaaatcactctgaatcttat 226
Query: 421 acaaacaactttatttttttttttattttttttttttttgagatagggtttctctgtgta 480
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 225 acaaacaactttaatttttttttt---ttttttttttttgagatagggtttctctgtgta 169
Query: 481 gccctgactgtcctagaactcactttgtagatcaggctggcctagaactcaggaatctgc 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gccctggctgtcctagaactcactttgtagatcaggctggcctagaactcaggaatctgc 109
Query: 541 ctgcctctgcctcccaggtgctggg 565
|||||||||||||||||||||||||
Sbjct: 108 ctgcctctgcctcccaggtgctggg 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
