BAC Information

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BAC

Clone NameMSMg01-185O05
Chromosome4 (Build37)
Map Location 136,744,529 - 136,885,289
singlet/doubletdoublet
Overlap geneWnt4, Cdc42
Upstream geneE2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
Downstream geneLOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185O05.T7 (MSMg01no185_o05.b1)MSMg01-185O05.TJ (MSMg01no185_o05.g1)
ACCAG377740AG377741
length704705
length of high quality
(start - end)
291 (120 - 410)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no185_o05.b1 PHD_FILE: MSMg01no185_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:42 2005CHROMAT_FILE: MSMg01no185_o05.g1 PHD_FILE: MSMg01no185_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,885,003 - 136,885,289)(136,744,529 - 136,744,805)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGTTGCTAGGCATGTCATCTTTACCACTGAGTGATCTTGTTAGCT
CCGCCATGTTCATCTTTCACAATTTTTTTGATATATGATCTCATGGTCAC
ACCTAACCTTCCTGCCTCTGTCTCACTAGTGCTGAGATTATAAGCTTGTG
CCAACCATGCCTGTTTTTAATGTGGTATAGGGCTTGAGTCCAAGGCTGTA
TGTGTGCTAGGTTATCACTCTGTATACTAAATAGCTATAGCCTTAGCCCC
TGACCTGTGATTTTAATGCCGCGAGGATACCAAATCTCAGTTGCCAACCT
CTCTTATCTCTTTCTTTAGGCCAAGAGGATTATGACAGACTACGACCGCT
AAGTTACCCACACACAGATGTTTTTCTAGTATGTTTCTCAGTGGTCTCTC
CATCCTCATTTGAAAATGTGAAAGAAAAGGTAAGTCAGGTTCTGCCCTTT
GAAACATGCACAGAATTCCTGTTGCCCTGTTACAGTTTCAGTGGCTTGTG
GATTAACAAAACATTTTAAAACCTTGCTTTTAGTGGGTGCCTGAGATAAC
TCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAAATTGATC
TCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAG
CCTN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCAGTCCCTCCAAACAAACT
TCCAGATACTCAGCCCAGAAATCCCTCCTCTGTCAATCACACAGCCCTCT
CCATTCTCCCGTCAGACAGGTGTCAACAGGGCACCTGCAGCCCCAGGCCT
CAAGTCACACCTGTCACTCTGCCTGCTGATGCCTGGCTTTTCCAGACCTG
AATCCTAAGAGCCCACAGTGGCTCACAGCAGACAGCCACAGTCTCCCATA
GTCCCTACCCCCCTCACTTAGCAAGTAACCACCAAACTGACCCCCAAACC
TGATTTTTTTTGTAACCCACCCCCAACTTCTCACTGGAGAGTGCAGGGTG
ATTTGGATAACACAACAAAAGAGATGAAATTACCCAGCTCTTCCTGAGCC
TACGTCTGATACATGCTCACAGGCTAGTGAGTGCATCTTTGAGTCTCTGT
TTCCCCATCTGCAAGATGGAGGATGCAGTCTTATTGCACAGGCCTGTAGC
AAGGGTTACCAAAGGCAAAGCCTGACTTGCGGGTATAATGCTTGTTCCTG
GGGAAGGAGACACCGGCCCCAGCCCTGCCTCCATCTCTGAGCTGGGCCAG
CCCCCACTTCCTTCCCCTTACCTCTGCCATACCACCCTTGGCCACCAGCG
CACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_o05.b1 MSMg01no185_o05.b1 CHROMAT_FILE:
MSMg01no185_o05.b1 PHD_FILE: MSMg01no185_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:42 2005
         (291 letters)



>mm_chr4_136884709_136885399
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttttttgatatatgatctcatggtcacacctaaccttcctgcctctgtctcactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caatttttttgatatatgatctcatggtcacacctaaccttcctgcctctgtctcactag 522

                                                                       
Query: 61  tgctgagattataagcttgtgccaaccatgcctgtttttaatgtggtatagggcttgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgctgagattataagcttgtgccaaccatgcctgtttttaatgtggtatagggcttgagt 462

                                                                       
Query: 121 ccaaggctgtatgtgtgctaggttatcactctgtatactaaatagctatagccttagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ccaaggctgtatgtgtgctaggttatcactctgtatactaaatagctatagccttagccc 402

                                                                       
Query: 181 ctgacctgtgattttaatgccgcgaggataccaaatctcagttgccaacctctcttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 401 ctgacctgtgattttaatgccgcgaggataccaaatctcagttgccaacctctcttaact 342

                                                          
Query: 241 ctttctttaggccaagaggattatgacagactacgaccgctaagtta 287
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 341 ctttctttagggcaagaggattatgacagactacgaccgctaagtta 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no185_o05.g1 MSMg01no185_o05.g1 CHROMAT_FILE:
MSMg01no185_o05.g1 PHD_FILE: MSMg01no185_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:43 2005
         (278 letters)



>mm_chr4_136744329_136745006
          Length = 678

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcagtccctccaaacaaacttccagatactcagcccagaaatccctcctctgtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcagtccctccaaacaaacttccagatactcagcccagaaatccctcctctgtcaa 260

                                                                       
Query: 61  tcacacagccctctccattctcccgtcagacaggtgtcaacagggcacctgcagccccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacacagccctctccattctcccgtcagacaggtgtcaacagggcacctgcagccccag 320

                                                                       
Query: 121 gcctcaagtcacacctgtcactctgcctgctgatgcctggcttttccagacctgaatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctcaagtcacacctgtcactctgcctgctgatgcctggcttttccagacctgaatcct 380

                                                                       
Query: 181 aagagcccacagtggctcacagcagacagccacagtctcccatagtccctacccccctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagcccacagtggctcacagcagacagccacagtctcccatagtccctacccccctca 440

                                                
Query: 241 cttagcaagtaaccaccaaactgacccccaaacctga 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagcaagtaaccaccaaactgacccccaaacctga 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)