BAC Information

Click to search

BAC

Clone NameMSMg01-186E11
Chromosome4 (Build37)
Map Location 77,010,202 - 77,157,046
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E11.T7 (MSMg01no186_e11.b1)MSMg01-186E11.TJ (MSMg01no186_e11.g1)
ACCAG378010AG378011
length782798
length of high quality
(start - end)		320 (46 - 365)291 (79 - 369)
definitionCHROMAT_FILE: MSMg01no186_e11.b1 PHD_FILE: MSMg01no186_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:13 2005CHROMAT_FILE: MSMg01no186_e11.g1 PHD_FILE: MSMg01no186_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,156,736 - 77,157,046)(77,010,202 - 77,010,489)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGCCTGAGCCTCCAGTTAATTCATTTGTCCACATTACATTATT
CCTTTCACTCTGTTATTTTTTCTACTACCTTGGACTATTCATATTGTATA
TTCAATTATTTTTATATTTGATATTTAATGGCAGAAGTTAAACCACTGGT
ATTGTTTTTCTTTTCTTTCTTTTTATAAACTTATTCACTTTACATCCTGC
TTACTACATACTTTCTGAAAATCCTCCTCCCCTTCTCTTCTGAGAGGGAG
GGGATACCCTGGATACCCTTCTATCCTGGCACTTCAAGTCTCGGTGTGGC
TAGGAGCTTCTTCTTTTCTGCACCCCCCGCAAGGCAGCCTAGGTAGAAGA
ACATATTCCATGTCCCGCCCATAACTTCTTGAATTGCTCATGCTCCAGTT
GTTCAGGACCCACACAAAGACTAAGCTGCACATCTGCTACATATGAGCTA
GGAGGCTTAGGTCCAGCTCATGTATATTCTTTGTCTGTTGGCTCATCCGT
GGTTTGTTGTTTCTTGTTCTTCCTATTTAGTGACTATAACGATACATGTT
ATTCATTCCTCTTCCCTTTTCCTTTTTTCGATCTCTTTTTCTTTTCTCTT
TTATTCTTTTCGTCTCCATTTTCCTATTCCTCTACATCATATTCTATATC
ATACCCTCCTCTTTTATATAAATTAATACTCACTGTTTCCTCTTTAATTC
TTTTTCCTTTTTATTATTTTCATTTTCTTTTG

CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTACCTAAGACAATACTGG
GGCTCATTCCGTAACCCACTATTTCCTCTGTTTCTGTCTTGGTAAACACA
GGGTTTATGATCATTTTACTGGTACATTACTCTGCACCAATAGTGGTAAG
AACAGTGTATCAAGACCCAGGAATAGAGTTTTCACCATTTTGGAACCCGA
GGGTATCAAAGACAAAAGGTATCAACATATTCCTAACACTATATGGCAAC
AGTCCCTTCTCCAGAGCTGCAGGACTCCTTTTCTTCTTCGTCTTTAGGGT
GGACCTTCTTCAAGACTTTGTGTGCACGCCCCGCGGCTTTCTGAGACTCA
GTGCCATCCTCATTCCGCCCCCCTATCTGCATGAGTGAGGCATCACATAG
CTCTATTGTCCTGTGAAGTACCTTATATACAACACCTGGCTTTCCTTTTG
CCCCACTCCTATATTTTTATTTAATTTTACCCATTCTTTTTCTTCTTTGT
CTTCCTTGTACCTGCATCATTTTACCGTTTTATCATCCATTACTTTCATA
ACTTTTTATATCATCATTCTATTTTTTATTCCTGACCTACCTATTAATAT
TTTTCTTTATACTTATCCCTCTTCTCTCTATTTCCCCAACTTATCATTTT
CTTTTCACTTTCATATTTTCTTTCTCTTATTTACAAATTTATATTACCTT
TTTCTCTACGATTTCTTTATTTCTTTCCAGCCCTTCTCCTCTTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e11.b1 MSMg01no186_e11.b1 CHROMAT_FILE:
MSMg01no186_e11.b1 PHD_FILE: MSMg01no186_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:13 2005
         (320 letters)



>mm_chr4_77156673_77157392
          Length = 720

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgcctgagcctccagttaattcatttgtccacattacattattcctttcact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaattctctgcctgagcctccagttaattcatttgtccacattacattattcctttcact 315

                                                                       
Query: 65  ctgttattttttctactaccttggactattcatattgtatattcaattatttttatattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctgttattttttctactaccttggactattcatattgtatattcaattatttttatattt 255

                                                                       
Query: 125 gatatttaatggcagaagttaaaccactggtattgtttttcttttctttctttttataaa 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 gatatttaatggcagaagttaaaccactgttattgtttttcttttctttctttttataaa 195

                                                                       
Query: 185 cttattcactttacatcctgcttactacatactttctgaaaatcctcctccccttctctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cttattcactttacatcctgcttactacatactttctgaaaatcctcctccccttctctt 135

                                                                       
Query: 245 ctgagagggaggggataccctggatacccttctatcctggcacttcaagtctcggtgtgg 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctgagagggaggggataccctgggtacccttctatcctggcacttcaagtctcggtgtgg 75

                      
Query: 305 ctaggagcttc 315
           |||||||||||
Sbjct: 74  ctaggagcttc 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_e11.g1 MSMg01no186_e11.g1 CHROMAT_FILE:
MSMg01no186_e11.g1 PHD_FILE: MSMg01no186_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:13 2005
         (291 letters)



>mm_chr4_77010002_77010692
          Length = 691

 Score =  511 bits (264), Expect = e-149
 Identities = 282/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttacctaagacaatactggggctcattccgtaacccactatttcctctgtttctgtc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cagttacctaagacaatactggggctcattctgtaacccactatttcctctgtttctgtc 260

                                                                       
Query: 61  ttggtaaacacagggtttatgatcattttactggtacattactctgcaccaatagtggta 120
           ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 261 ttggtaaacacagggtttatgatcattttacgggtacattagtctgcaccaatagtggta 320

                                                                       
Query: 121 agaacagtgtatcaagacccaggaatagagttttcaccattttggaacccgagggtatca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 321 agaacagtgtatcaagacccaggaatagaggtttcaccattttggaacctgagggtatca 380

                                                                       
Query: 181 aagacaaaaggtatcaacatattcctaacactatatggcaacagtcccttctccagagct 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aagacaaaaggtatcaacatattcctaacactatatggcaacagtcccatctccagagct 440

                                                           
Query: 241 gcaggactccttttcttcttcgtctttagggtggaccttcttcaagac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaggactccttttcttcttcgtctttagggtggaccttcttcaagac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |