BAC Information

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BAC

Clone NameMSMg01-186F22
Chromosome4 (Build37)
Map Location 85,110,619 - 85,110,910
singlet/doubletsinglet
Overlap genenone
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186F22.T7 (MSMg01no186_f22.b1)MSMg01-186F22.TJ (MSMg01no186_f22.g1)
ACCAG378075AG378076
length750779
length of high quality
(start - end)		314 (46 - 359)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no186_f22.b1 PHD_FILE: MSMg01no186_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:20 2005CHROMAT_FILE: MSMg01no186_f22.g1 PHD_FILE: MSMg01no186_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAAC
AAAGAATTCTCACCTGAGGAATACCAAATGGCAGAAAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGTCTGACTGTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGC
GGTTCCTCATATTTTGTTCATCCCCCCACCCCAGGATCCAGCAATACCTC
TCCTGGGCATATACCCCCACTATTCCCCAAAAGAAAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGGACTACTCAGCTATTACAAAGAATGAATTTATGAAATTC
GTAGCCCATTGGATGGACCTGAACGGCATTATCTTGAGTGAGCTTACCTA
TTCACCAAGGAACCTCCCCCCACACGTACTCCCTGAAAAGCGGCATATAA
CTCTCCCCCCTAAGCTACCCTTAGAATATAAATTTATTTCCCCTACATCG


CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGACACAATTTCTATATAAAAAT
TCACGAGCGCACATATTCTCAAGTCAATCCCCTAACACTTTGGAGGGCCA
GACTCTGTGTGCCTAGCAACAATTCTATTTTTTTGTGTGTTTTATCCTTA
GCCTCAACTTCCTTGCTAGGCTTTAGGGAATCAGCGGGACTTACCACCAA
TTGGATTGCAGCACTCCTTGGCTTGCCGTGAGGCCTGCTATCATCAGGTA
TGTAAAATCCTGCCCAATGTAGTCAGAAGTTAAAATCAAGCCATCATAAA
CCTGCAGGACTTATGACCCTGAAACTCTTAAGGGAGTTTTCCTGGACGAG
ATCTCAGTGGAACACCCCCCCAAAACCCCAAATGGGAAATATATACGAAC
TGATTCCATGCAGTGTGAATGCTGAGGCGCAAGTGGAGAGCTTTTATAGC
ATGAAACACTGATAGATTACCACCCCTTCCATTCCACACCCCGGTTTCAC
AGTATTAGCCTTTTCCCAAGACCTTTCTTCCCCCTTTTGAAACGTACATT
TTGTTTTATCGCTGTGCTCATTTTTAGAGCACATTCTTCTCCCCCATCTT
CCACCCATTTTTCTCCCTCTTTACCTTTCCACTTTTACTTTAAATTCGCC
CCCCTTTTCTTTTACTCCCTTTTGATTCATATAATTTCCCATTCCTTATT
ATTCACCCCTTTTTTCTTTTATTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_f22.g1 MSMg01no186_f22.g1 CHROMAT_FILE:
MSMg01no186_f22.g1 PHD_FILE: MSMg01no186_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:20 2005
         (292 letters)



>mm_chr4_85110419_85111110
          Length = 692

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacacaatttctatataaaaattcacgagcgcacatattctcaagtcaatcccctaac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aggacacaatttctatataaaaattcacgagcacacatattctcaagtcaatcccctaac 260

                                                                       
Query: 61  actttggagggccagactctgtgtgcctagcaacaattctatttttttgtgtgttttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttggagggccagactctgtgtgcctagcaacaattctatttttttgtgtgttttatc 320

                                                                       
Query: 121 cttagcctcaacttccttgctaggctttagggaatcagcgggacttaccaccaattggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttagcctcaacttccttgctaggctttagggaatcagcgggacttaccaccaattggat 380

                                                                       
Query: 181 tgcagcactccttggcttgccgtgaggcctgctatcatcaggtatgtaaaatcctgccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagcactccttggcttgccgtgaggcctgctatcatcaggtatgtaaaatcctgccca 440

                                                               
Query: 241 atgtagtcagaagttaaaatcaagccatcataaacctgcaggacttatgacc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtagtcagaagttaaaatcaagccatcataaacctgcaggacttatgacc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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