BAC Information

Click to search

BAC

Clone NameMSMg01-186K01
Chromosome4 (Build37)
Map Location 45,925,605 - 45,925,873
singlet/doubletsinglet
Overlap genenone
Upstream geneD4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
Downstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K01.T7 (MSMg01no186_k01.b1)MSMg01-186K01.TJ (MSMg01no186_k01.g1)
ACCAG378251AG378252
length829874
length of high quality
(start - end)
273 (36 - 308)116 (77 - 192)
definitionCHROMAT_FILE: MSMg01no186_k01.b1 PHD_FILE: MSMg01no186_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:40 2005CHROMAT_FILE: MSMg01no186_k01.g1 PHD_FILE: MSMg01no186_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTT
TGCAGACTTAAGGATGGCTTCCGGATGTCCAGCCGATCAGATAGGAAGCC
ATCCCCTCACCCCCACTTGCTACTTGGCAAGTGGCCAGAGATGCAGCGGT
ATCTGAACACTATCTGTCCCTCATACCTGCTCAAAGATTTCACGAATGAA
GAAGTGTCGGCTGAGGGTGAAGCTATAGCAGTTGAGTTCTTTCAGCACTA
ACCCCGGGTACTCCATCACTTCTTTGGTCAGCAGGAGGTGAAAACATTCA
TACCTGGGAGGGAGGGAGGTAGTCACTCCCCGCTCCCCCTTCTTCCCTTC
TACTTTTTTTTTTTTTCCCCCCCCCCCCCCTCCTTTCATCTTCTAACCAA
CTCCTTTTTCTCCACCCCCTTCTCTTTTTTTAATTCTTATCCTCCTTCTC
TTTTCTATTTATTTATTTTTTTTTTTTTTCCTCCTTTTTTTTTCTTTTTT
TCCTCTTTCTTTTTTCTCTCTATAATTTCTTTCCCCTTTATTTTCTCCAC
CACTCTATCCCCCCTTCTCTACTTCTTTCTATATTTTTTTTAGTACAACT
ACGCATTATATACATTATCTATTATCTAATTTTTTTCTTTTAACTTTCGC
AATTCTTCTTTTTCGTTATTCTTCCACTTATTTTTTCTTCTTCCCTATCC
TTTTTTTTCTCTAATGATATATTCTTTCTCTTTCGTTATTTTTCTTCTTT
TCACCTCTTCCTTCCCACTTATTCATATGTTACCATTTACCTACTACACC
TTATTTCTTATCATCTTTTACCTCTCTTG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTAGCCTTGGCTACATGATA
AGTTTCAGAAACACAGCAAGAACCTGCCTTAAGAGAAAAAAGAAGAAAAG
AAGAAAGGGAAGGAGAGGAGAAAAATGGGAGGGTTTTTGCTCNTTTTTTT
TCTCTCTTTCTTTTTCTCCCCCCTCCCCCTCCTTCTCTCCCTTTCTCCCT
CTCCCCTCCCCCTCCCTTTCCTTTTTTCTCTTCCTTCTCTTCTTTTCCTT
TTCTCTCTTCTTTTCTTTCCTCTCTCCCTCTTTCTTTTCTCTCCCCCCCT
CCTCCCCTTCTCTCTCCCTCCCCCCTTTTTTTTTTTCCCCCCCCCCCCCC
CCCTTTTCTTTTTTTTCCCTCTCTTCTTTTCCTCCCTTTCCCCCTTCCTT
TCCCCTCTTTTTTTTTTTTTTCCTTCCCTCTCCCCCCCTCCTCCCCTTTT
CCTTTACTTTCTTTCCTCCTTCCTCCCCTTTCCTCCTTTTTGCCCTTTCC
TTTTTTCTTCTTTCTTTTCTCTCTTCCCCTCTCCCTTATTTCCTTTCTCT
TTTTTTTTCCTTCTTTTTCCTTCTTCCCCCCCTTCCCCTCTTTTCCCTTA
CCCTTTCTTCTTCTTTCTTTTTCTTTCTCCTTTCTCTTTTCTTTTTTCTT
TCCTCCCCCCCTCCTCTTCCCCTTTTCCTTCTTTTTTCCTTACTCCTCTT
CCTCCTTTCCTTCCTTTTCTTCCTCTTTTTTCACTTTCCTTCTTTTCTCT
CCTTTTCTCACCCCTTTTTTTTTCCTTCTTCCCCTCTCTTTCTTTTTTTC
CTCTTCCCCCCCTCCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k01.b1 MSMg01no186_k01.b1 CHROMAT_FILE:
MSMg01no186_k01.b1 PHD_FILE: MSMg01no186_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:40 2005
         (273 letters)



>mm_chr4_45925402_45926073
          Length = 672

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctactttgcagacttaaggatggcttccggatgtccagccgatcagataggaag 63
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 472 ggaattctactttgcagacttaaggatggcttcc-gatgtccagccgatcagataggaag 414

                                                                       
Query: 64  ccatcccctcacccccacttgctacttggcaagtggccagagatgcagcggtatctgaac 123
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccatccccccacccctacttgctacttggcaagtggccagagatgcagcggtatctgaac 354

                                                                       
Query: 124 actatctgtccctcatacctgctcaaagatttcacgaatgaagaagtgtcggctgagggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 actatctgtccctcatacctgctcaaagatttcacgaatgaagaagtgtcggctgagggt 294

                                                                       
Query: 184 gaagctatagcagttgagttctttcagcactaaccccgggtactccatcacttctttggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaagctatagcagttgagttctttcagcactaaccccgggtactccatcacttctttggt 234

                                         
Query: 244 cagcaggaggtgaaaacattcatacctggg 273
           ||||| ||||||||||||||| ||||||||
Sbjct: 233 cagcaagaggtgaaaacattcgtacctggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 672
Length adjustment: 9
Effective length of query: 264
Effective length of database: 663
Effective search space:   175032
Effective search space used:   175032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)