BAC Information

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BAC

Clone NameMSMg01-186L05
Chromosome4 (Build37)
Map Location 56,430,487 - 56,599,939
singlet/doubletdoublet
Overlap genenone
Upstream geneKlf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186L05.T7 (MSMg01no186_l05.b1)MSMg01-186L05.TJ (MSMg01no186_l05.g1)
ACCAG378301AG378302
length747774
length of high quality
(start - end)		319 (46 - 364)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no186_l05.b1 PHD_FILE: MSMg01no186_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:46 2005CHROMAT_FILE: MSMg01no186_l05.g1 PHD_FILE: MSMg01no186_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,430,487 - 56,430,795)(56,599,692 - 56,599,939)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAACAAGAATGAGATTTTAGTGTACAGACACATCCACCTTCAG
TGTTCCATTTTCACATTTTTTTCACTTTCTTTGTAAGGATTTTGGAGGTA
CAGAGCCATAAAAAGATGTACTAGAAGCCACATGGTGAAGAAGACATTTC
TACTACTGCATCAAGTGTCATAACAGCAACTGAACCCAACTTTCTCAGAA
GGACACAGGAAAGAGAAGGGGCTCAACATGGTTACAAAGAAGGAAAACAT
CTTCATCAGAACTCTAGCCTTTGGTTGAAGAGACCTCAGGCAAGGCTTTG
GAACTGTGATGGTTTATGAATTTTCGCCGCCCCATTGTACCTTTAAACCT
CATTTTGAAATGTCACCCCCCCCCCACAGAATTTAGCACAAAAACAAGTA
ATTGTAGTCTTAATATTAGTTATATATTCAATTGTACAGTTGGGAGGCAC
TATAACTTGTCAGCTCTTTAAAAACTGGAGTAGGAGCTGGAGGAATGGAT
CCTCAGCCTGTCCTCGGTGTCAAAGGATGCACCTAATTCCATCGAGACTT
GATGCCTCAGATAAGGGGTAATGGTTGTTATAATTACTGTAGTATCCCTC
TATTTTTCATTTATTTTTTACTACTTACATTTGGTATGTACAGTCTCAAT
ATGTCGACTTCCCCTTCTCCACCATTCGTACTATATTCTCTCTCCCC

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGTGTAGGTAAAGCAGGGCCC
CTACAGAGAATCTCTTTACTCTAAAATCTGGGGAGCAGGACACCATAGCT
GACTAGTGGGGGAAGGCACTGTGAAGAGCTGTCTGTGGGTCTAGAAGGGA
GTTTGTTTGAGGCCAGGTGCCCTGTCTTTTGCGTTTGCACTTATCAGTGC
AGTGGCAAAGTGCAAGGTGAGCGAGCTCTTAGACTAGTCTCTTGGTGAGC
TCCTGATTAAAAACTAGAAAATGCTTATCGTCAGACCCCTAACCAGGCTG
CCTTTCCCTTTATTTTTCTTTCCCCCCCCCCCCCTCCGATNTCTGAGGAT
TTGGATACTTCTTATGCCCCCCCCTTAAAAAAAAAGAACACCAGTGAGGG
GGAACTATCTGTATACTGCTGGCTGTAGATGACATGTGTCCGTTCGTTGT
TTTCCATATTCAATTAAGATTTATGTGGTTGCATTCTCTCGTTATGTTTT
GTTTTCTTTCCATGTATTTTAACTTTTTTCTTTTTGTCCCTCCTTTTTAT
TTTTTCCTATCTCCTGTGTTCTCTTCTCCTTTCTTCTTCTCTTTATAGCC
TCTTCCCCCCCATTATATCTCCTACTTTTTTTCTCTTTCTCCTTTTCCCC
TTTACCCCTCTTTCGCGTTTTTTTCTCCTCTTTTAATCCACCTCTGTCTT
TGTTTTTTTTTTCTTCTTTCGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_l05.b1 MSMg01no186_l05.b1 CHROMAT_FILE:
MSMg01no186_l05.b1 PHD_FILE: MSMg01no186_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:46 2005
         (319 letters)



>mm_chr4_56430283_56431001
          Length = 719

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataacaagaatgagattttagtgtacagacacatccaccttcagtgttccatt 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcaataacaagaatgagattttagtgtacagacgcatccaccttcagtgttccatt 264

                                                                       
Query: 65  ttcacatttttttcactttctttgtaaggattttggaggtacagagccataaaaagatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcacatttttttcactttctttgtaaggattttggaggtacagagccataaaaagatgt 324

                                                                       
Query: 125 actagaagccacatggtgaagaagacatttctactactgcatcaagtgtcataacagcaa 184
           || ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 325 accagaagccacatggtgaagaagacatttctactactgcatcaagtgccattacagcaa 384

                                                                       
Query: 185 ctgaacccaactttctcagaaggacacaggaaagagaaggggctcaacatggttacaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaacccaactttctcagaaggacacaggaaagagaaggggctcaacatggttacaaag 444

                                                                       
Query: 245 aaggaaaacatcttcatcagaactctagcctttggttgaagagacctcaggcaaggcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaaaacatcttcatcagaactctagcctttggttgaagagacctcaggcaaggcttt 504

                    
Query: 305 ggaactgtg 313
           |||||||||
Sbjct: 505 ggaactgtg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_l05.g1 MSMg01no186_l05.g1 CHROMAT_FILE:
MSMg01no186_l05.g1 PHD_FILE: MSMg01no186_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:46 2005
         (287 letters)



>mm_chr4_56599492_56600178
          Length = 687

 Score =  426 bits (220), Expect = e-123
 Identities = 241/248 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagtgtaggtaaagcagggcccctacagagaatctctttactctaaaatctggggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cttcagtgtaggtaaagcagggcccctacagagaatctctttactctaaaatctggggag 389

                                                                       
Query: 61  caggacaccatagctgactagtgggggaaggcactgtgaagagctgtctgtgggtctaga 120
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caggacaccatggctgactggtgggggaaggcactgtgaagagctgtctgtgggtctaga 329

                                                                       
Query: 121 agggagtttgtttgaggccaggtgccctgtcttttgcgtttgcacttatcagtgcagtgg 180
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 agggagtttgtgtgaggccaggtgccctgtcttttgtgtttgcacttatcagtgcagtgg 269

                                                                       
Query: 181 caaagtgcaaggtgagcgagctcttagactagtctcttggtgagctcctgattaaaaact 240
           ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 268 caaagggcaaggtgagagagctcttagactagtctctgggtgagctcctgattaaaaact 209

                   
Query: 241 agaaaatg 248
           ||||||||
Sbjct: 208 agaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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