BAC Information

Click to search

BAC

Clone NameMSMg01-186L22
Chromosome4 (Build37)
Map Location 71,231,565 - 71,231,879
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186L22.T7 (MSMg01no186_l22.b1)MSMg01-186L22.TJ (MSMg01no186_l22.g1)
ACCAG378331AG378332
length736796
length of high quality
(start - end)
319 (46 - 364)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no186_l22.b1 PHD_FILE: MSMg01no186_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:50 2005CHROMAT_FILE: MSMg01no186_l22.g1 PHD_FILE: MSMg01no186_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGAAAGCAGTGTTTATTCATTAGAGCGGTAACTTGAGCCATC
TTGTGGGTTTGGAAAATAAATTCATACATGAAAACCAACACTTACAATAT
TATTTTTAAATACGTTCCCCAGAACATCTCCATAATCTATTCATATTTCC
CACCATTTACCCAACTCTTCCTCTTTGAAAGAATAAATGACACATACCTT
AGTGTGCCACCCAAAGAAAGATGTAAATGTCTGTAAATAACACCCATGAT
GAAGAAAGTGAATATCTTTCTTTGTTTTTTAAGCTCAATGATGATATAGA
TGTATCTGTAAATCANGGGAGACTTAAGACCCATCACTGAAGAGGTCACT
TGTATGTTTTTAGTTGGCCCCCCCAANTGNGATTNAAATATCGTGTCTCT
TTGGATGTGATCTAAGTTCTAAATCACCAGAATTAAGATTGCTATCTTGT
TAAGCCATGGCATGGACAAAAAATATATACTAGGGCTAAAACCTCCCATA
TAATCTTTGAGATAAAATGATCCTCAGAAAGAAATACTGATTATACATGA
TGAACATAGTGCACAGGCAAATATGCTCCTACAAGTACTTTGTTAATCCG
GAAGAAGTTACTATTCCTGAATCATAATCCGGAAAAAGACCTAGCCATTG
CCCACTTTATTTTCATCCCTTCTAAACCCATTGCGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATTACCAGGATAGTCAAACAA
CATAAATTTCAACAAAAATAGATTGTCACGCCCAATCACTCTGACATAAG
AAATTTCTCAATAGATCACTTGGAAATTGTAGTCAATCAAAATCCCATCC
AAACGATCTTTCATCATGATCAAGAGATGGCATGATCCAGAGATTCAGGA
TGTTTCAACATACCTAAATAAGTAGATGCAATTCACCACACAAATGGACT
CAATAAGAACATTTCAATTGATCCAGAAAATGTTTTTGACAGAATCGAAT
TACTTCATGACAAAAATTTGGTAAATTACTCCCCCCCCCCCCATAAGCTG
ATTTAAGTTTTATTTCATTGTCCCCCCCCCCCACAAAAAAAAAAAAACCT
ATGAGAATATGTTCCCCATGAAAACTTGAATCCAGTTATCTAACTTATTA
ACTATTGACTACTCCCCATTATATTCAGAACCTGTGCACTGATTATTACT
ATAACTTCCCCTCGATCCAATATAAGTCTAAGCGTATTTTGCTAATCTTC
AATTAGAATTCTATTTTTGTTCCTCTCACCATTTTTATACAAGATGTGGC
TAGACACTTTACTTACCCCTTTATTGTACCCCCCCTTAAAATTCCAATGA
TTTCTTATTTTTGGCGCGCCCAATTTTTATACACCACGTGATTTCCGCGG
CGTTCCCTCAGCCCCTTTTTTACATGATTTTCTTTTTTTCCTCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_l22.b1 MSMg01no186_l22.b1 CHROMAT_FILE:
MSMg01no186_l22.b1 PHD_FILE: MSMg01no186_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:50 2005
         (319 letters)



>mm_chr4_71231361_71232079
          Length = 719

 Score =  565 bits (292), Expect = e-165
 Identities = 309/320 (96%), Gaps = 10/320 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggaaagcagtgtttattcattagagcggtaacttgagccatcttgtgggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggaaagcagtgtttattcattagagcggtaacttgagccatcttgtgggtt 264

                                                                       
Query: 65  tggaaaataaattcatacatgaaaaccaacacttacaatattatttttaaatacgttccc 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaaaataaattcataaatgaaaaccaacacttacaatattatttttaaatacgttccc 324

                                                                       
Query: 125 cagaacatctccataatctattcatatttcccaccatttacccaactcttcctctttgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaacatctccataatctattcatatttcccaccatttacccaactcttcctctttgaa 384

                                                                       
Query: 185 agaataaatgacacataccttagtgtgccacccaaagaaagatgtaaatgtctgtaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaataaatgacacataccttagtgtgccacccaaagaaagatgtaaatgtctgtaaata 444

                                                                       
Query: 245 acacccatgatgaagaaagtgaatatctttctttgtttttt-----aagctcaatgatga 299
           ||||||||||||||||||||||||||||||||||||          ||||||||||||||
Sbjct: 445 acacccatgatgaagaaagtgaatatctttctttgt-----ccaaaaagctcaatgatga 499

                               
Query: 300 tatagatgtatctgtaaatc 319
           ||||||||||||||||||||
Sbjct: 500 tatagatgtatctgtaaatc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)