BAC Information

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BAC

Clone NameMSMg01-186M23
Chromosome4 (Build37)
Map Location 71,231,565 - 71,231,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186M23.T7 (MSMg01no186_m23.b1)MSMg01-186M23.TJ (MSMg01no186_m23.g1)
ACCAG378375AG378376
length754753
length of high quality
(start - end)		383 (45 - 427)584 (77 - 660)
definitionCHROMAT_FILE: MSMg01no186_m23.b1 PHD_FILE: MSMg01no186_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:55 2005CHROMAT_FILE: MSMg01no186_m23.g1 PHD_FILE: MSMg01no186_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGAAAGCAGTGTTTATTCATTAGAGCGGTAACTTGAGCCATCT
TGTGGGTTTGGAAAATAAATTCACAAATGAAAACCAACACTTACAATATT
ATTTTTAAATACGTTCCCCAGAACATCTCCATAATCTATTCATATTTCCC
ACCATTTACCCAACTCTTCCTCTTTGAAAGAATAAATGACACATACCTTA
GTGTGCCACCCAAAGAAAGATGTAAATGTCTGTAAATAACACCCATGATG
AAGAAAGTGAATATCTTTCTTTGTCCAAAAAGCTCAATGATGATATAGAT
GTATCTGTAAATCAATGAGAGACACCAAGAGTTATTACTGAAGAGGTCAC
TTGTATGTTTTTAGTTGTATATGGCTGAATGAGATATATGTTATCTTGTC
TCTTTGGATGTGATCTAAGTTCTAAATCACCAGAATTAAGATTGCTATCT
TGTTAAGCCATGGCATGGACAAAAAATATATACTAGGGCTAAAACCTCCC
AAATAATCTTTGAGATAAAATGATCCTCAGAAGAAAATACTGATTATATA
TGATGAACACAGTGCACAGCAAAATATGCTCTTACCAGTACCTTGTTAAT
CCCGAAATTGTTACCATCCCCGAATCCTAATTCCAAAAAGAACCATATTA
TTGCTCCCTTTATTCTCTGCTCCTCTTTAATACGGGAATTAATTATATTC
TTAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATTACCAGGATAGTCAAACAA
CATAAATTTCAACAAAAATAGAATGGTAGGCCAATCACTCTGACATAAGA
AATTTCTCAATAGATCACTTGGAAATTGTAGTCAATCAAAATCCCATCCA
AACGATCTTTCATCATGATCAAGAGATGGCATGATCCAGAGATTCAGGAT
GTTTCAACATACCTAAATAAGTAGATGCAATTCACCACACAAATGGACTC
AATAAGAACATTTCAATTGATCCAGAAAATGCTTTTGACAGAATCGAATT
ACTTCATGACAAAAACCCTGCAAAGACTGGAGGTGAAGATAAGCTGATCC
AAGTTTTATTTCATTGTCCCAATCAGGTCAATTCCCTGGAGCCCTATGAG
AATATGTTTCCAATGAAAACTTGAAACCAGTTAAGAAATAAATAATTAAA
GAAGACACCAGAAAATAGCCAGTACATGTGCACTGATTAGTAGTAGAATA
TCCACTGAACCAAAAGAAATCTACAGACTCAAGGTAGCCTCCATCAAAAT
ACAGTGATGTTCTTCACAGAAATACAAAACAAAATATGGTAACAATAGCA
GCAACCTTTGTGTTATATAAAAAAGAAAAAGAAGCAAGGGATGTGTTTGG
GTGAAGAATGCCAATGAAGAAAAAAGATGTTTCCTGCAGCGCATGCAATA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_m23.b1 MSMg01no186_m23.b1 CHROMAT_FILE:
MSMg01no186_m23.b1 PHD_FILE: MSMg01no186_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:55 2005
         (383 letters)



>mm_chr4_71231361_71232143
          Length = 783

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggaaagcagtgtttattcattagagcggtaacttgagccatcttgtgggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggaaagcagtgtttattcattagagcggtaacttgagccatcttgtgggtt 264

                                                                       
Query: 65  tggaaaataaattcacaaatgaaaaccaacacttacaatattatttttaaatacgttccc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaaaataaattcataaatgaaaaccaacacttacaatattatttttaaatacgttccc 324

                                                                       
Query: 125 cagaacatctccataatctattcatatttcccaccatttacccaactcttcctctttgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaacatctccataatctattcatatttcccaccatttacccaactcttcctctttgaa 384

                                                                       
Query: 185 agaataaatgacacataccttagtgtgccacccaaagaaagatgtaaatgtctgtaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaataaatgacacataccttagtgtgccacccaaagaaagatgtaaatgtctgtaaata 444

                                                                       
Query: 245 acacccatgatgaagaaagtgaatatctttctttgtccaaaaagctcaatgatgatatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacccatgatgaagaaagtgaatatctttctttgtccaaaaagctcaatgatgatatag 504

                                                                       
Query: 305 atgtatctgtaaatcaatgagagacaccaagagttattactgaagaggtcacttgtatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtatctgtaaatcaatgagagacaccaagagttattactgaagaggtcacttgtatgt 564

                              
Query: 365 ttttagttgtatatggctg 383
           |||||||||||||||||||
Sbjct: 565 ttttagttgtatatggctg 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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