Query= MSMg01no187_d10.b1 MSMg01no187_d10.b1 CHROMAT_FILE:
MSMg01no187_d10.b1 PHD_FILE: MSMg01no187_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:27 2005
(319 letters)
>mm_chr4_46670298_46671016
Length = 719
Score = 555 bits (287), Expect = e-162
Identities = 305/311 (98%)
Strand = Plus / Plus
Query: 5 gaattcaaggtaagcccctgtacttaagagagttccaggacagccagggccaccacaatg 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggtcagcccctgtacttaagagagttccaggacagccagggccaccacaatg 264
Query: 65 actaaggtgatggcatcttattttgactccatttgttgttggtttagacagttctcagct 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 actaaggtgatggcatcttattttgactccgtttgttgttggtttagacagttctcagct 324
Query: 125 ctctactctgctcccacagaagtcatggctgccttggcaacacttttgaaatgtctaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctactctgctcccacagaagtcatggctgccttggcaacacttttgaaatgtctaagg 384
Query: 185 ccttgaccatggttcagatgtattaaacaaaaataattaagctaaagtaaccaaaagaga 244
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 ccttgaccatggttcaaatgtattaagcaaaaataattaagctaaagtaaccaaaagaga 444
Query: 245 tatgagttaaaaaatgtagtgttatgaaataacttctgtacatttcactacgtagagaga 304
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatgagtaaaaaaatgtaatgttatgaaataacttctgtacatttcactacgtagagaga 504
Query: 305 tctgcctgaaa 315
|||||||||||
Sbjct: 505 tctgcctgaaa 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_d10.g1 MSMg01no187_d10.g1 CHROMAT_FILE:
MSMg01no187_d10.g1 PHD_FILE: MSMg01no187_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:27 2005
(289 letters)
>mm_chr4_46784720_46785408
Length = 689
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%), Gaps = 2/289 (0%)
Strand = Plus / Minus
Query: 1 cagacatatgcctataaggaagtgagtgtggggaccacagagccattgctactaagcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cagacatatgcctataaggaagtgagtgtggggaccacagagccattgctactaagcctg 429
Query: 61 cagtatctgaagggagccctggagctggaatggggaaagcctgggcctctaagctttctg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 428 cagtatctgaagggagccctggagctggaatgggggaagcctgggcctctaagctttctg 369
Query: 121 ttagtctgtcagccctgggaatgatatccttggacaaggccattgctcagagtagaagat 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttagtctgtcagccctgggaatggtatccttggacaaggccattgctcagagtagaagat 309
Query: 181 aactcccagcaagggacttagctgagattctcagtctcctgtacttaacatcaagagcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aactcccagcaagggacttagctgagattctcagtctcctgtacttaacatcaagagcca 249
Query: 241 gggatgg-ctgctcggctggacatagcccagaactcctatagatgacca 288
||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct: 248 gggatggtc-gctcggttggacatagcccagaactcctatagatgacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
