Query= MSMg01no187_j07.b1 MSMg01no187_j07.b1 CHROMAT_FILE:
MSMg01no187_j07.b1 PHD_FILE: MSMg01no187_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:56 2005
(306 letters)
>mm_chr4_134698253_134698958
Length = 706
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%), Gaps = 1/291 (0%)
Strand = Plus / Minus
Query: 16 gaattcaggaacagctggagctgcggaatagagggcctgtctcaaagcacattcttaaaa 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattcaggaacagctggagctgcggaatagagggcctgtctcaaagcacattcttaaaa 634
Query: 76 aacaaagtacactggctgtgtgtctgtaattccagcacttgagatgtgaagcaggaagat 135
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 633 aacaaagtacact-gctgtgtgtctgtaattccagcacttgagatatgaagcaggaagat 575
Query: 136 caggagcttaaggtgaccctctgctacacatggactctggagccagcctgggctacacga 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caggagcttaaggtgaccctctgctacacatggactctggagccagcctgggctacacga 515
Query: 196 gatcctgttaataagtacatagaaaaggctttaaagtttctctgtctttcaaacctcaga 255
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gatcctgttaataagtaaatagaaaaggctttaaagtttctctgtctttcaaacctcaga 455
Query: 256 gatcaaacaagattacatttaggcgtgcgccttttatcccagcacccagga 306
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gatcaaacaagattacatttaggcgtgcgccttttatcccagcacccagga 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_j07.g1 MSMg01no187_j07.g1 CHROMAT_FILE:
MSMg01no187_j07.g1 PHD_FILE: MSMg01no187_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:56 2005
(214 letters)
>mm_chr4_134543849_134544462
Length = 614
Score = 348 bits (180), Expect = e-100
Identities = 201/208 (96%)
Strand = Plus / Plus
Query: 1 tttgctcagggtctggctaatggttgctggtagaatcatttcctgggaaccaaacattta 60
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 201 tttgctcagggtctggctaatggttgctggtagaatcttttcctggaaaccaaacattta 260
Query: 61 gcttagttcttgagagcttggcaaaggggaggtgaagagtgaccatccatacctcggctt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gcttagttcttgagagcttgggaaaggggaggtgaagagtgaccatccataccacggctt 320
Query: 121 gtcacccctgagcatggagaccttgcccttggttagaaaggtgagccaacgccacctgaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 321 gtcacccctgagcatggagaccttgcccttggttaggaaggtgagccaacgtcacctgaa 380
Query: 181 ctctaaggagcagaaaggtcattttttt 208
|||||||||||||||||| |||||||||
Sbjct: 381 ctctaaggagcagaaagggcattttttt 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space: 124025
Effective search space used: 124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
