Query= MSMg01no188_n13.b1 MSMg01no188_n13.b1 CHROMAT_FILE:
MSMg01no188_n13.b1 PHD_FILE: MSMg01no188_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:38 2005
(316 letters)
>mm_chr4_107554800_107555515
Length = 716
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%)
Strand = Plus / Minus
Query: 4 ggaattcactgagaggtgaatctattctttgtacccagtctcaggcattttaatatagca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggaattcactgagaggtgaatctattctttgtacccagtctcaggcattttaatatagca 535
Query: 64 gtgcaaatggacagagatacacctttactctatggcttggacatgatttcagtgtggcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtgcaaatggacagagatacacctttactctatggcttggacatgatttcagtgtggcct 475
Query: 124 tcccaactccatttatgtgactaaaggtttggtcctcagggtggtactatgggaaatggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tcccaactccatttatgtgactaaaggtttggtcctcagggtggtactatgggaaatggt 415
Query: 184 atagaccttgaagaggtgggaattaatggtgggttcttagatcattgcagcatatcagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atagaccttgaagaggtgggaattaatggtgggttcttagatcattgcagcatatcagca 355
Query: 244 gaggaattgtgggcctccaatgtctgtgtgtttctctcctggtgagagaggtcactgcct 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 354 gaggaattgtgggcctccaatgtctgtgtgtttctctcctggtgagagaggtcactgcgt 295
Query: 304 ggccacacaccc 315
||||||||||||
Sbjct: 294 ggccacacaccc 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_n13.g1 MSMg01no188_n13.g1 CHROMAT_FILE:
MSMg01no188_n13.g1 PHD_FILE: MSMg01no188_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:38 2005
(289 letters)
>mm_chr4_107409983_107410670
Length = 688
Score = 443 bits (229), Expect = e-129
Identities = 271/287 (94%), Gaps = 5/287 (1%)
Strand = Plus / Plus
Query: 5 tatctgagctacaagacagggtggccacaggaacctggggcctcccgagtggtaggcata 64
||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 205 tatctgagccacaagacagggtggccacaggaacctggggcctggtgaatggtaggcata 264
Query: 65 tcctctgtcactgagccacactcccagtcagtctgtgttcgtagctgagacag--cactt 122
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ttctctgtcactgagccacactcccagtcagtctgtgttcgtagctgagacagcacactt 324
Query: 123 gtaggctctggaggaacacaccaaagtgtgctgtatcctacatctggcgggggatcccac 182
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 gtaggctctggaggaacacaccaaagtgtgctgtatcctacatctggc---ggatcccac 381
Query: 183 tcagctggtgctgtgatcggcaggactcagccccatcttacaggagggcaaacaaaaccc 242
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 tcagttggtgctgtgatcggcaggtctcagccccatcttacaggagggcaaacaaaaccc 441
Query: 243 aggaagaggacaaggatatgtccagagaggctcaggcatttcccagt 289
||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 442 gggaagaggacaaggacatgtccaaagaggctcaggcatttcccagt 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
