Query= MSMg01no190_a20.b1 MSMg01no190_a20.b1 CHROMAT_FILE:
MSMg01no190_a20.b1 PHD_FILE: MSMg01no190_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:10 2005
(308 letters)
>mm_chr4_50066746_50067453
Length = 708
Score = 563 bits (291), Expect = e-165
Identities = 300/303 (99%)
Strand = Plus / Plus
Query: 5 gaattctcctcctgtagagtctaccatcgtttagcacaagggtaagaagctcccatctta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctcctgtagagtctaccatcgtttagcacaagggtaagaagctcccatctta 264
Query: 65 tctttggctcaaatccttcttttgtcatcatagatgccaattgtcctcgggtaatgttca 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 tctttggctcaaatccttcttttgtcatcatagatggcaattgtcctcgggtaatgttca 324
Query: 125 gagcacttattattctaagatgtcctctgatgttggtgagtagttatagttatttccttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcacttattattctaagatgtcctctgatgttggtgagtagttatagttatttccttt 384
Query: 185 gagctgatttgtccacaaagtaaacagtaatagctgttacaatgtctccagaatgttggt 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 gagctgatttgtccacaaagtaaacagtagtagctgttacaatgtctccagaatgttggt 444
Query: 245 atattttagtgaaacagattcatttatttctagagactctttctcaaggagagggaaaag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtattttagtgaaacagattcatttatttctagagactctttctcaaggagagggaaaag 504
Query: 305 tga 307
|||
Sbjct: 505 tga 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_a20.g1 MSMg01no190_a20.g1 CHROMAT_FILE:
MSMg01no190_a20.g1 PHD_FILE: MSMg01no190_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:10 2005
(277 letters)
>mm_chr4_50225975_50226651
Length = 677
Score = 441 bits (228), Expect = e-128
Identities = 261/282 (92%), Gaps = 18/282 (6%)
Strand = Plus / Minus
Query: 1 aggtaacagtgacaggagaaatattgacataagaacagatgttaatttctttgacaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggtaacagtgacaggagaaatattgacataagaacagatgttaatttctttgacaaata 560
Query: 61 gcaccaaaataaatggaaaagggagagtgtatatctcnttttgaaaaaaagc-----aaa 115
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 559 gcaccaaaataaatggaaaagggagagtgtatatctc-ttttgaaaaaaagcaaaaaaaa 501
Query: 116 aaaaaaggaggcatgtattttctatgggaataggattgcttattaatcacgtaccagata 175
|||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 500 aaaaaaggaggcatgtatttcct------------ttgcttattaatcacgtaccagata 453
Query: 176 aaatgttttatagaattgcttaaaaacagcatagcaggtaagattttatattccaatatt 235
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 aaatgttttatagaattgcttaaaaacagcatagcagataagattttatattccaatatt 393
Query: 236 tgattaccaatgtttttaaaaatcggtgaaatgtgaacaatg 277
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 392 tgattaccaatgtttttaaaaatcggtgaaatgtgtacaatg 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
