BAC Information

Click to search

BAC

Clone NameMSMg01-190C06
Chromosome4 (Build37)
Map Location 117,779,800 - 117,823,290
singlet/doubletdoublet
Overlap geneSt3gal3, Jmjd2a
Upstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn
Downstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190C06.T7 (MSMg01no190_c06.b1)MSMg01-190C06.TJ (MSMg01no190_c06.g1)
ACCAG380585AG380586
length703702
length of high quality
(start - end)		314 (46 - 359)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no190_c06.b1 PHD_FILE: MSMg01no190_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005CHROMAT_FILE: MSMg01no190_c06.g1 PHD_FILE: MSMg01no190_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,779,800 - 117,780,110)(117,823,012 - 117,823,290)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGGGGCAGAGAAACCAACCAGCTTCAACACCCAACCCAAGGCA
GTAGGTGAGAAGTAAGGGTCGGGACACTTTACTAATAAAGAAGACGCGAG
CCTTCGGGAACTAGAAATGCGGGCACAGTCCGAGGTTTGACGTGAAGAGC
GGCACATGCTCGAGGGGCTCGGAAAGGAAGCGGAGATTTGCCACAGCATG
CAGATTTCAAGGGTTGGGGGAAGGGAAGCACCAAAGGTCTCAGGCCCCAG
CAACTAGAGCGGCGGTTTTAGTTTCTATGCCTCCGTCCCGCAGGGATTGC
AGCTGCATGTTATAGCTCCCCCCCCGCCGTGAACTACAGTGACCATACTT
ACTGGAGTCTTCCCATTGGAGTAAGTGTAGCTTCCAGGCAGAATAATACA
AAAATCCCAGGACCAGGAAGAGGCAGAGGGCTAGCAGCAGATTGCGCACA
AATACCAAGAGTCCCATCTTCACATGACTCACAATTTCCTACATGACCTA
AAAACAAACAGGAAAGCCAGTAAGATATTAAGCAGTCTTCCTCCGCATAG
TGAAGAAACTCTAAAGACCGTTCTAAATGCATGACAACCACTGAGTCCCG
GCAGGGCACGCAGGGGACGTTTCTAGACATACATGTCCTCTCCTTGTTCC
TGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATCTCTGCAATTTTCACTTAAC
ACAGTGGAAATCTCCCCTTGCCATTCAGTGTTCACATATGTCATGGTTTG
GGCCACTTTTGGCTTCGTGAGTAGAGCAGATGTCAGTATGTGAAGACGGG
TCTATGAGCTTGTCTATTTCTGTCCCTGCTGTACTATCTTGGTCCCTCAT
GTTGGGGTCAGGCACTCTGGGCTCTTAGAGGCTGTCTGGCTCGTTCACAC
TGACCTCCTTACGCTACAGTGGCCCTTCACAGGGGCTGGCTGTGCACAGT
GGCAGTTTTTTGGTCCCTGCACATGAAACCTGACTATGGTAGGTGGAGGA
AGAAATGGCTTCTCTGCATTATGCTAAAGTTGCCTAGAGCGAGCATGTGG
GCACCTACAATAGGTGTGCCCACCACAGCTTACGCTAGGCTTCTTTGCAG
AGACCTCGGGCCTCTGGGGGAAGGAGTGTTTTTATCGTAGCCAGTAGCAC
TGCAGTGGTTTGCAAATCCACAGTCCCCTGGGCAGTAGCCTCATGGCGAT
GCCTGATGGGCGCACTGTCAAAGCCAATTTCCTGTCAGCCACTGAATGCA
TGGCCAGAGGGATAGACAACAGGGGCTTCTCATCTCCACATGCAACAGCA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_c06.b1 MSMg01no190_c06.b1 CHROMAT_FILE:
MSMg01no190_c06.b1 PHD_FILE: MSMg01no190_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:17 2005
         (314 letters)



>mm_chr4_117779597_117780310
          Length = 714

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggggggcagagaaaccaaccagcttcaacacccaacccaaggcagtaggtga 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggggggcagagaaaccaaccagcttcaacacccaacccaaggcagtaggtga 263

                                                                       
Query: 64  gaagtaagggtcgggacactttactaataaagaagacgcgagccttcgggaactagaaat 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaagtaagggtcgggacaccttactaataaagaagacgcgagccttcgggaactagaaat 323

                                                                       
Query: 124 gcgggcacagtccgaggtttgacgtgaagagcggcacatgctcgaggggctcggaaagga 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 gcgggcacagtccgaggtttgacgtgaagagcggcacatgctcgcggggctcggaaagga 383

                                                                       
Query: 184 agcggagatttgccacagcatgcagatttcaagggttgggggaagggaagcaccaaaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcggagatttgccacagcatgcagatttcaagggttgggggaagggaagcaccaaaggt 443

                                                                       
Query: 244 ctcaggccccagcaactagagcggcggttttagtttctatgcctccgtcccgcagggatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctcaggccccagcaactagagcggcggttttagtttctatgcctccgtcccgcagggatt 503

                      
Query: 304 gcagctgcatg 314
           |||||||||||
Sbjct: 504 gcagctgcatg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no190_c06.g1 MSMg01no190_c06.g1 CHROMAT_FILE:
MSMg01no190_c06.g1 PHD_FILE: MSMg01no190_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:17 2005
         (281 letters)



>mm_chr4_117822812_117823492
          Length = 681

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatctctgcaattttcacttaacacagtggaaatctccccttgccattcagtgttcaca 60
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 479 tgatctctgcaattttcacttaacacagtggaagtctccccttggcattcagtgttcaca 420

                                                                       
Query: 61  tatgtcatggtttgggccacttttggcttcgtgagtagagcagatgtcagtatgtgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tatgtcatggtttgggccacttttggcttcgtgagtagagcagatgtcagtatgtgaaga 360

                                                                       
Query: 121 cgggtctatgagcttgtctatttctgtccctgctgtactatcttggtccctcatgttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgggtctatgagcttgtctatttctgtccctgctgtactatcttggtccctcatgttggg 300

                                                                       
Query: 181 gtcaggcactctgggctcttagaggctgtctggctcgttcacactgacctccttacgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtcaggcactctgggctcttagaggctgtctggctcgttcacactgacctccttacgcta 240

                                                  
Query: 241 cagtggcccttcacaggggctggctgtgcacagtggcag 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cagtggcccttcacaggggctggctgtgcacagtggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |