BAC Information

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BAC

Clone NameMSMg01-190I07
Chromosome4 (Build37)
Map Location 109,497,919 - 109,498,202
singlet/doubletsinglet
Overlap geneFaf1
Upstream geneBtf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I07.T7 (MSMg01no190_i07.b1)MSMg01-190I07.TJ (MSMg01no190_i07.g1)
ACCAG380836AG380837
length739771
length of high quality
(start - end)
314 (59 - 372)281 (132 - 412)
definitionCHROMAT_FILE: MSMg01no190_i07.b1 PHD_FILE: MSMg01no190_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:47 2005CHROMAT_FILE: MSMg01no190_i07.g1 PHD_FILE: MSMg01no190_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGNCCCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCACTTTCCTCAATAGCATGGCTATTGGTGTTG
TCATTGTTGAGGTGCTGGTTAGGCAGCCATATTGTTGGGGTGTCATGCAG
GTAGCTTCCTGTTGTTGTAAAGGGCAGAATTTCACAGCAGACTTCCTGGT
CCTCTGTTCCCTTTCCACCCTATCATCCTCTATGTTCCTTGAGCTATAGG
TATGGTAATTGTGTTGTCTATGTATCTGTTGTGTATAGACAACCCACTAT
CAGTTGTTATTTGTGTTTTGAACAGTTATATTGTCAGGGAAATACAAGAG
ACTTTAGCCTACTTCAGACTTTTTTTTGTTCCCCCCCCCCGCTTGATCTT
ACCTGAAAGCCTCCTACCTCAGGACTACTTTTTATAAAACCAGAAGTTGT
CAAGGAAAGGAAGCAATCAGTAATGCTACCAGCTATGACGCCTATGAACC
ATAACCATGACTAGCATGACCAAATATCCAAAATAGTTCAATAGTGGCAC
ACATCCCTTGACAATAACAACTCCTCTCTAATTAAACTTAAGGCCTACTA
AGCAACAGGGAAATCATGTCTGGTGCTGGAAGCTTACCCAACTTCTCTTG
GCTAGTGAGTTCATTGATCTTAAAGGATAACCATCTAAACTACTTTATTA
AACCAACAGAATTCTTTATGGCATTCTAAATACTTATCC
NNNNNNNNNTTTTCCCNNTTTTCCTTTCCTCCTTTTCTCTTTTTTTNNNN
NNTTTACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAATATATTACTATT
AATATATGAGATATATATGTATGCATATTATAAAAACTATTTTAGCCTTA
GTTATAGTTTATTCACTTTAAGCATTATCTAACAATTTTCTTAGTGATAA
AATTAGAAGTGCTAAACAGACTGACTTTTGCCTGTGCAATTCTTAAAATA
TAAAGCTTACATGGACTTTGTTGTTGAGTTACCAATATGATCTTTTTCTC
ATTTGTTATAAAGCTAGTAAAGCTATGTCCATTTTTAGTATAATTTTAGG
TTCAATTTGATGTTTTTTTTTGCACCCCCCCCCCCCATGAAGGCTACATT
GAGTACTTTTTCTTCCCAGGGATTTTCATCTTACAAATTATTACTCCCCA
ATAATGTATTTAAGCATGAAAGTTCAACTGGGCTAATGAATATAAATAAC
AGCATTTTTTTTTTTTATTGGTGGCACATGCCTTTAATCCCAGTACTTGG
GAGACAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGT
GAGTTCTGGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGAAAACA
AACTAAACAAATCTAACAAAACAAAACAAATTTAAAAAAAAACTTCCACA
ACATTACTGTAAGAATATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i07.g1 MSMg01no190_i07.g1 CHROMAT_FILE:
MSMg01no190_i07.g1 PHD_FILE: MSMg01no190_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:47 2005
         (281 letters)



>mm_chr4_109497719_109498402
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 281/284 (98%), Gaps = 3/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaatatattactattaatatatgagatatatatgtatgcatattataaaaactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaaatatattactattaatatatgagatatatatgtatgcatattataaaaactatt 260

                                                                       
Query: 61  ttagccttagttatagtttattcactttaagcattatctaacaattttcttagtgataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagccttagttatagtttattcactttaagcattatctaacaattttcttagtgataaa 320

                                                                       
Query: 121 attag---aagtgctaaacagactgacttttgcctgtgcaattcttaaaatataaagctt 177
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaggagaagtgctaaacagactgacttttgcctgtgcaattcttaaaatataaagctt 380

                                                                       
Query: 178 acatggactttgttgttgagttaccaatatgatctttttctcatttgttataaagctagt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatggactttgttgttgagttaccaatatgatctttttctcatttgttataaagctagt 440

                                                       
Query: 238 aaagctatgtccatttttagtataattttaggttcaatttgatg 281
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagctatgtccatttttagtataattttaggttcaatttgatg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 684
Length adjustment: 9
Effective length of query: 272
Effective length of database: 675
Effective search space:   183600
Effective search space used:   183600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)