NNNNNCCGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTAACAAATCACAACACCAGAGATAAAAACAAA
TGCACCTGCACAGAACAGCAGTACCGCAACCCTTAGCGCCATCTGCCGCA
CTGCACCGAAACTCACGACCCAGGCAAGCGCTGTTAATCATGCTGCAAAT
GACGGACGCGGGGGATCCATCTAGCTCCGGCATTCCCCTTCCCTCCTGTT
AGTGCCTTCACATAAACCCAACTGGAAATCACCTAAAATCCAGTCTCCAT
TTCTTCTTTTCTAGAGCGAGGGTACAGGAAGGAGTTCATAAAGTGACTTG
GAGGACAACTCTAATTTTCGTGAATGTTTTATTACCCCACCCGCCATTCA
TTTATTACTCCCAGACTTACTGAGAATTCCTTCCTCTTGAATCAACATGG
ATTCTGAACCTCACATCGTCTATAGGTTGAGGCTATAGAGTATTTCCCAA
GGCCTGAAAGATGGAGTTCTTCCTTACGGTGTACAGCAGGATTATGCTTC
CTACCATCTCTTGCTTCTAGCCTTGTGACTGGCTCCTGCCCACTTCCTGT
AACTGGGAACAAGCAGCAGCACTTTGGGGATCTCAAGGACCAGCCATGGG
TGCTCTTCTGTACCTCTTGCCTCTTTCAGTTGGCTGGTGTAAAGATCGGC
CCCCAGGTAACCCTGCAAAGTACTTTCAGAAAACAGCAGAACCTCTGTAA
G

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAATATCTAAAGGTGCAACA
TCTTAAAAACTCACGGGATGGTGAGGCCTATGCTGGACCTGCCTTAGCTG
GCTCAAGTCAACTTACGATGTGTTTTTGATTCCCTTTTGAAGTACTGGCC
ATGCATTGTGCTATGGAGGCAGTGAGGAATTTATTTGGTTGCAGGGTGTC
AACACAGATCTGGGTAAGGAGTGGTCTATAAACACCTTTCTAAAGTCCAG
CATATAAACACTGTCTGTGGAGCCCAGTTGGGCAGCAGAGAATTGGGATA
CGGTTTGTGATTGTGGCCTCCAAACTGACCGCCAAGGAATGAACAGAACT
GCAGGCTAGTGGTATGTAGTTGTGAAACAAAACCCCTAAAATCATGGAGT
GTCAAAGCTGGTTGAGCCCCCATAGTCTGGCAGTACAGCCCTTCCATTCT
ATAGAGGAGGAGATCATTTAAGGAGGAGTCCTGGTACACATATTTAAGCT
TGCATCTCTTGCGGAACTTAAGTCATCAACTTGGCCTTTGCAATGGGTGA
GTATCCTATCAGGTCTGGTTCATTGGTTGTATGCATTCCAACAATTCAAT
GCTGGACAGAATGAAGGAAAATCTCGGGAGCTAAATATTCCCAATTCTCT
TGTA

Query= MSMg01no190_i23.b1 MSMg01no190_i23.b1 CHROMAT_FILE:
MSMg01no190_i23.b1 PHD_FILE: MSMg01no190_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:51 2005
         (327 letters)



>mm_chr4_104193002_104193728
          Length = 727

 Score =  555 bits (287), Expect = e-162
 Identities = 314/323 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttaacaaatcacaacaccagagataaaaacaaatgcacctgcacagaacagca 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gaattctttaacaaaacaaaacaccagagataaaaacaaatgcacctgcacagaacagca 468

                                                                       
Query: 65  gtaccgcaacccttagcgccatctgccgcactgcaccgaaactcacgacccaggcaagcg 124
           ||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtaccgcaacccagagtggcatctgccgcactgcaccgaaactcacgacccaggcaagcg 408

                                                                       
Query: 125 ctgttaatcatgctgcaaatgacggacgcgggggatccatctagctccggcattcccctt 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 407 ctgttaatcatgctgcaaatgacggactcgggggatccatctagctccggccttcccctt 348

                                                                       
Query: 185 ccctcctgttagtgccttcacataaacccaactggaaatcacctaaaatccagtctccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 347 ccctcctgttagtgccttcacataaacccaactggaaatcacctaaaatcccgtctccat 288

                                                                       
Query: 245 ttcttcttttctagagcgagggtacaggaaggagttcataaagtgacttggaggacaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttcttcttttctagagcgagggtacaggaaggagttcataaagtgacttggaggacaact 228

                                  
Query: 305 ctaattttcgtgaatgttttatt 327
           |||||||||||||||||||||||
Sbjct: 227 ctaattttcgtgaatgttttatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no190_i23.g1 MSMg01no190_i23.g1 CHROMAT_FILE:
MSMg01no190_i23.g1 PHD_FILE: MSMg01no190_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:51 2005
         (286 letters)



>mm_chr4_104054135_104054820
          Length = 686

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaatatctaaaggtgcaacatcttaaaaactcacgggatggtgaggcctatgctgg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaatatctaaaggtgcaatatcttaaaaactcacgggatggtgaggcctatgctgg 260

                                                                       
Query: 61  acctgccttagctggctcaagtcaacttacgatgtgtttttgattcccttttgaagtact 120
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 261 acctgccttagctggctcaagtcagcttgcgatgtgtttttgattcccttttgaagtact 320

                                                                       
Query: 121 ggccatgcattgtgctatggaggcagtgaggaatttatttggttgcagggtgtcaacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccatgcattgtgctatggaggcagtgaggaatttatttggttgcagggtgtcaacaca 380

                                                                       
Query: 181 gatctgggtaaggagtggtctataaacacctttctaaagtccagcatataaacactgtct 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctgggtaaggagtcgtctataaacacctttctaaagtccagcatataaacactgtct 440

                                                       
Query: 241 gtggagcccagttgggcagcagagaattgggatacggtttgtga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggagcccagttgggcagcagagaattgggatacggtttgtga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)