BAC Information

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BAC

Clone NameMSMg01-191E12
Chromosome4 (Build37)
Map Location 84,769,223 - 84,769,439
singlet/doubletsinglet
Overlap geneD530005L17Rik
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, LOC622811
Downstream geneLOC100040303, Sh3gl2, A930009N24, LOC668052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191E12.T7 (MSMg01no191_e12.b1)MSMg01-191E12.TJ (MSMg01no191_e12.g1)
ACCAG381353AG381354
length886854
length of high quality
(start - end)
254 (106 - 359)220 (134 - 353)
definitionCHROMAT_FILE: MSMg01no191_e12.b1 PHD_FILE: MSMg01no191_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:50 2005CHROMAT_FILE: MSMg01no191_e12.g1 PHD_FILE: MSMg01no191_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCACCCTTATTTTATTTTTCCCACCCCTTTATTCTCTCCTCNNNNNN
CCCTATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
CGCGGAATTCAACCAGTTTTTAAAATTTATTTGAAACATTAAACATGATA
GAAGCAGGATAAAAATCTCTTATGAAGTCTTCTATGAAAAGAAATTGTGA
CAGGCTTCTGACTAGATAGAAACCATTTCATCTACAAGGAAGAATACGTA
GTGTAACTATGGCTTCATACAATGAATTTGGTAGTGTTCTTTCTATTTCT
ATTTTGTGGAATAGTTTGAAGAGTATTGGTATTAGGTCTTATTTGAAGGT
CTGATGGAACTATGCATTAAACCCATCTGGTCCTGTCTTTTTTTTTTTTT
TTTATTGAGTTTTTTTTTTTTCCCCCCACCACCCCAAATATTAATATAAT
TTAGTTTTTGATTTTTCCTTCCTTCTCATTCAAAAAAAAAAAATGCTCTT
TGCGGGAGGTGCGTTCACCCCCTACCACCTTATGTTCTCTTACTCCTTTT
ATACCCAACCCCCAATCTCCGTTTCTACATTTAATCAATTTTTCCCTTTT
CGCCCTTCATGTATCACCACCCCAACCCCCTCTTTTTTCCATCATATTTT
CCAAACTCTTCCACTCTTTTTTTTATTTTAAACTCCCACCCCAACACCCC
TTTTTCCCCCAACTTTTTATTCTTCTATCTTTTCACCGCAATTCATTTAA
CAATACTTCACTACTTTACCCCCTTCCTCCCCTCTTCATACACCCCCACC
AAACTATATATCTTATCTTTTCCCAACCTGACGTGTCCCTCCTTCTCCCT
CCTTTCCCCGCTCATTCTTTCATATACAATATATTC
TCTCTTTTTTTTTCGCCATATTCACCTCTTACACCCTCCCCTTCTTTTNT
NNCTTATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGACTTGAGTACT
TTTTTTATATAAGTTAAGCTGCCTCTTTGCACAAATTAGTTTTCAAATTC
ATATTGGAAACACTGGTATTCATGCCTAGTTCTTTTGAGCCCCCAAATGA
TGTTTAATATTTATATAAGATTTCTATTTCAAACAATAGATTGTAAGCTC
CTGAAGGCTTATTTTTTGTTGTGCGAAAGGAATAATTTTATGTGTGTGTG
TGTGTGTGTGCGCCCCCCACTTTTTTTTTTTTCTATTCCTTCTACATCAA
TTACTTCATATTTTTTTTTTTATTTTCCCCCCCCCCCCCCCCTTTTAAAA
ACAATATTTGCTATTATTCTTTTTTACCCCCCATAAAAAAAAAAACAATC
TTGAGGTGGAGGTCTTCTCTACATCCTATTTCTCTTTAATATCATCATTC
ATTCTATCTAATCCCTTATAATCCACCCCCCCATCCCTTTTTCCCCACTA
TTTCTCCCCCCTTTATATTCTCCATTAATACTATTCCAACATTTCCCATC
CCTTAACGCTACGTAATTTGTGATATTTTTTATTAATTCATCAAAATCAT
CTTCACTACCTATTTTATATCTTCACAATTTCATACTATATAATCCATAT
ACCTTTCACTATTCTCCATTCCCCTCCTTTTTTCCGGATTAATCTCTCAC
TATCCATACTCCTTTTTAATCATCATTTACACGATTAATCCCCTGTCTAT
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_e12.g1 MSMg01no191_e12.g1 CHROMAT_FILE:
MSMg01no191_e12.g1 PHD_FILE: MSMg01no191_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:50 2005
         (220 letters)



>mm_chr4_84769023_84769641
          Length = 619

 Score =  358 bits (185), Expect = e-103
 Identities = 210/219 (95%), Gaps = 3/219 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagacttgagtac-tttttttatataagttaagctgcctctttgcacaaattagttt 59
           |||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||||
Sbjct: 417 acagagacttgagtacttttttttatataagttaagctgcctc--tacacaaattagttt 360

                                                                       
Query: 60  tcaaattcatattggaaacactggtattcatgcctagttcttttgagcccccaaatgatg 119
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 359 tcaaattcataatggaaacactggtattcatgcatagttcttttgagcccccaaatgatg 300

                                                                       
Query: 120 tttaatatttatataagatttctatttcaaacaatagattgtaagctcctgaaggcttat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttaatatttatataagatttctatttcaaacaatagattgtaagctcctgaaggcttat 240

                                                  
Query: 180 tttttgttgtgcgaaaggaataattttatgtgtgtgtgt 218
           ||||||||||| ||||||||||||| | |||||||||||
Sbjct: 239 tttttgttgtgtgaaaggaataattgtgtgtgtgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 619
Length adjustment: 9
Effective length of query: 211
Effective length of database: 610
Effective search space:   128710
Effective search space used:   128710
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)