BAC Information

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BAC

Clone NameMSMg01-191K04
Chromosome4 (Build37)
Map Location 52,784,803 - 52,785,039
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908
Downstream geneLOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191K04.T7 (MSMg01no191_k04.b1)MSMg01-191K04.TJ (MSMg01no191_k04.g1)
ACCAG381581AG381582
length871815
length of high quality
(start - end)
---238 (134 - 371)
definitionCHROMAT_FILE: MSMg01no191_k04.b1 PHD_FILE: MSMg01no191_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:19 2005CHROMAT_FILE: MSMg01no191_k04.g1 PHD_FILE: MSMg01no191_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCCCAATTTTAACCACAATACCACACTACGTTTATCTTTTTTTNNTN
NNNNNATCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGTAATTCTACCAACTTGGCAAAGNTACTTATATTCCCTT
CTTTTTTCCCAATTCGAGTGAGTATCGGTAAAACTTTTTCCCCCCCCCAA
CTTTTTTGCGGTACTATTAATTCTCCTTCGGGCGCAAAATACAAAAAAAT
CTGTTGAGCGACTTCTCAAAAAATAAAACAAAAAAATTTTAAAACCTGGT
TGCCCACTGGTAGGCATTTTTTTTGAACCTCTGGAAATGAAAAAATGCTT
AAACCCTCCCCCAAAAAAGAAATATTAATCCTCCCCAAAAAACCCCTTTT
TTTTTATTTCGCAAGAACATTACCCCCCCCTCATATAAAACCCCCAGACA
ATAAAAAAAAAACCGAGGTAATTCACCCAATTTTCTGTCTCCTATAGTTT
CCACCCCCCTATTAATATTATCCTCTTCCTTCAATAAAAACACCCCCCCT
TTTATTTTTTTCTCCATAAAATGAGGGCGCTAAAAATATCTTCTTTGTGT
TGTGACACTTTACCTAATCCTATTAAAATAAATATCACCAACACCCCTTT
AAAGATAAATTTATCACACATAATCAAGTGNTCCCTCTTTTGTATTGGGT
TCCGTACGAGCTTTTTCCATATAATTATATTCAGAAAGATCTTCCCCGCC
CTACCAAAAAAAAAAAAAAAACAAAAACATCACTCTCTATTCTGCGGGGT
GGTGTTGGTTCTTTCTCTCTTACCTTAAACCACCGTTCCAAAGTAGTGAG
TGTTGATTGATAACTATTTCC
TCCCTTTTTTTTTCCCCTCTCCACGAGCTTAACAATCAACATTTTTNTNN
NNNTCGTCTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCAGGGGATGAGAG
CCAGGTTAACAAGAGAAGCCCTGGTGCCGGAGGAGGAACTTAGCTCCCTG
TTCTTGGCTGACAGGCGAATCGAGTATGTGTGCTTCCCGGGTTTTGGTTT
CTCTTTTCTTTTTGATAACAGTGGGTGGCTATGGACAAGGAGGAAGAAGA
CTGAGAATTCCTCTCATTCTCCAGTTCTGACCACGTCAGTAAAGGAACCA
TGTTCTTCTACGAAGTCCTGTGTCTGTCTCTAGTTTTGTAAGGTGATGGT
CAATGAACCTTCTGTTTTTTTTATCCCCCCCCCCCCTGAGAATGGAATCC
TGTCTTCATATATCCAATATCACATCAAAGAAAATATTTTGTATCATTGG
CTCTACCAAAACGCATAGGCTTATCTTTTTTACAATTTCTATTGCCTATT
TCACCTATTCACTTCCCTAATCCTATCCTCACTCCCGCTTTTTCCTCCAA
CTATCCCTTCTATCTCTTTCCATTACTCCCCTGAATTATGATGAATTAAT
AATTCTGCCTTTACACTTCTCTACCCCTACACATATGTCAGAAAGTTAAT
TTAATACTTCAAAATTATTCCTATTGTTCCTTCTCCCCTCTTCACCCCGG
TTCAACGCGACGTTCCCATTTCGTCTTATTATCCGCAATAAGGAGAAATT
CTCCGTTATTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_k04.g1 MSMg01no191_k04.g1 CHROMAT_FILE:
MSMg01no191_k04.g1 PHD_FILE: MSMg01no191_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:19 2005
         (238 letters)



>mm_chr4_52784603_52785239
          Length = 637

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcaggggatgagagccaggttaacaagagaagccctggtgccggaggaggaacttag 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 437 catgcaggggatgagagccaggttaacaacagaagccctggtgccggaggaggaacttag 378

                                                                       
Query: 61  ctccctgttcttggctgacaggcgaatcgagtatgtgtgcttcccgggttttggtttctc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 377 ctccctgttcttggctgacaggcgaat-gagtatgtgtgcttcccgggttttggtttctc 319

                                                                       
Query: 121 ttttctttttgataacagtgggtggctatggacaaggaggaagaagactgagaattcctc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttttctttttgataacagtggatggctatggacaaggaggaagaagactgagaattcctc 259

                                                                     
Query: 181 tcattctccagttctgaccacgtcagtaaaggaaccatgttcttctacgaagtcctgt 238
           || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tccttctccagttctggccacgtcagtaaaggaaccatgttcttctacgaagtcctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 637
Length adjustment: 9
Effective length of query: 229
Effective length of database: 628
Effective search space:   143812
Effective search space used:   143812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)