BAC Information

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BAC

Clone NameMSMg01-192D19
Chromosome4 (Build37)
Map Location 9,884,040 - 9,884,415
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192D19.T7 (MSMg01no192_d19.b1)MSMg01-192D19.TJ (MSMg01no192_d19.g1)
ACCAG381981AG381982
length1,2481,222
length of high quality
(start - end)
419 (28 - 446)381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no192_d19.b1 PHD_FILE: MSMg01no192_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:20 2005CHROMAT_FILE: MSMg01no192_d19.g1 PHD_FILE: MSMg01no192_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAGCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
TTATTCATGGGGTTTTGACTGGATTTACAGTTATGGGTATGACATTCCTT
GTGTGGAACTGGCCTCCATTCCAATAAGAAAATGGTTAGTTATTCTCAGA
ATAGTTACGCCACTCTTGCACTAGTGGGCATAACCTGTTTGACTGATGTT
GTGGATCATGAAGTTCACAGCTGGATAAAATTGTTGATGCTTTTTCTTCT
TCAGTAACTCATATGTCTACTGTCAGCACTATGAAAGCTGGCTAGCAGGT
AGCATACTTCTGGCTCTGTTCCAGCTGATTTCCCTACACGTAGCAACTGA
GGCATGTGGTGTCTTCAGTAATAGGGACTTAACAACTAAATCTGGTGGGC
AACCAAAGAGTGTGACAAAAACCTGTGTTGTTGGAGATTCTGGGTCTTTT
TATGCCCCGCCATGTTTTGAAAAGAAAAATGTGCAAAAATTTTTACATTT
GGATACATATAACATCCTTTGATTTTTTATGCTAGCAGTTGTTGATGCTC
ATTTATCAATGGATTTGTATTGTAAAATTGAGCTATTCTATCAGTCCTCC
ATTGGCTATTTAGAATAGTTCATTAAAGTGACTTTTTTAAAATTATTAAG
TTATTTTATTAATTTACATTCCAAAAGTTGCCTCCCTTCCTGGTACCCTC
TCCTCGGGTCTTCATCCCCCTTTCCCCACCTTTGAGAGGGTGCATTCCTT
CCCTTACCCCCACCTCACCCCCACCAGCATCCCTCTTCCCTGGGGCATCA
AGTTTCCACAGGATCAAGTGTATCCTCTCTCACTGAGGCTGTACAAGGCA
GTCCTCTGCTACACATGTCTCTCAAGNCCATAAATCACCCCATGTATGCT
CCTTTGGTTTTTTACTTAAACTTTTGGAACTCCGAGGAATCCCTTTAATT
GACCCTGTTGTTTTTTCTTTAGGGTTGGGTATCCCCTTAAGATCCTTTGG
GCCTCTTTTTAAATTTTTCTATTGGGGCGCCACCCCCCCCCCCGGGTTAT
TGTATAATTCTGCTTTTTTTTTCTCTATCCCTTGGATAACCTCCTCCATC
TCCCTTTAAATCTATACTTACTTCCTTTTCTTTTATATATTTTTTATAAG
TATATTAGTGCATGTATTCCCCTTTCCTTCTCTCCTCTTCTTCATTCCCT
TTCTTATTCCTTTTTTATTCTTTCCTTTTATTCATTCTTTACTCTCTC
NNNCCTTGAGTGATGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTAAAAATCAAAAAGTCATTTCACATATG
GAAGTCACTAAATTGTTCATTTTTAAATGGTGAGGTTTTGTGCCTTCTTC
AATAATCTGTTAATTTTTCAAAAATGATTATTTCATTATCAGCCTTATCT
TTGGAAATTAGGTTAAAATGCTGGGCCATCAACCCTCTCTACTAAACAGC
TTTTGAGCAGTAGGTGGACCCTTAAAGACTGGCTCTGTCATATGTGCTGC
TTGGGGTTTTCAGATGTCACAGCCTGTTCATTTTGTGTAAAACTTCCTAC
AAACTCCATATTTTGGACACACATTTATAAAAAAAAAAAAACAAGTATTA
TTCTTCATTGCTGTTAGCAAATACTGCCCTAATCCACTGTTCAGGTTATT
TTTTTATCCCCCCCGGTGCCTTTACTTCCAGAGAAACAAAGAAGGCAAAC
ATGTCATGAGTGGCCCAGTTTGACTGAGAGCAGATCCATGCCACTGGTCA
CAAAGGTAAACACTTGAGACATTTAACCCAGCCCAGCAGTCCTAAATGGA
AGGGGGTGGTCATCTGGATTATGAATCACCTAATTGGCATGTCAGAAAAT
ACGCATTTTATTGACAGGAGGTGATTGTGGGGGAGAGTAATTTTTCATGT
AAATAGCAGACACCTGTCTCCTCCTCTCTTTATTCACACTACTGTGTGTG
GTGGGAGGGGCAAGAATCGGAGTGATTCTCTGCTGCAGCTTTGTATTCTG
TAACACATGATTTTATTTCAGCAGTCCTACAGCAATCCTGGATTGTCTGA
TTTCATGAAAGATCTTTAACTGTCTTTCTGTGTATCACATCAGTAGCTGC
TTTGGAAAAATACCCCTTGTCTATCTCTTCTTCTCTGGAGAATTTGTAAT
AATTAATTCCAAAAAAAAATTTTATGGATCTCTTTATAACCCCCAAAAAT
CATTGTTTATTCCCTTCTTCTCTCCATATATTTTTCCTCTATTTTTTTCT
TATAACATCTTAAAACCTTCCTTCTATTTACTTTTTCACTTCTATATAAT
AATATTTTCATTTTGTTGTCTTTTTTTCATTATTTTTATTCCTCTTTTTT
TTTTTTTTCTACTCTCCTTTTCTTCTTACTTTTGTATATTATTATTTCTA
CCATTTCTTTTCTAATCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_d19.g1 MSMg01no192_d19.g1 CHROMAT_FILE:
MSMg01no192_d19.g1 PHD_FILE: MSMg01no192_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:20 2005
         (381 letters)



>mm_chr4_9883840_9884618
          Length = 779

 Score =  696 bits (360), Expect = 0.0
 Identities = 373/378 (98%), Gaps = 2/378 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaaaatcaaaaagtcatttcacatatggaagtcactaaattgttcatttttaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tttaaaaatcaaaaagtcatttcacatatggaagtcactaaattgttcatttttaaatgg 517

                                                                       
Query: 61  tgaggttttgtgccttcttcaataatctgttaatttttcaaaaatgattatttcattatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgaggttttgtgccttcttcaataatctgttaatttttcaaaaatgattatttcattatc 457

                                                                       
Query: 121 agccttatctttggaaattaggttaaaatgctgggccatcaaccctctctactaaacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agccttatctttggaaattaggttaaaatgctgggccatcaaccctctctactaaacagc 397

                                                                       
Query: 181 ttttgagcagtaggtggacccttaaagactggctctgtcatatgtgctgcttggggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 396 ttttgagcagtaggtggacccttaaagactggctctgtcatatgtgctgcttgggatttt 337

                                                                       
Query: 241 cagatgtcacagcctgttcattttgtgtaaaacttcctacaaactccatattttggacac 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagaaatcacagcctgttcattttgtgtaaaacttcctacaaactccatattttggacac 277

                                                                       
Query: 301 acatttataaaaaaaaaaaaacaagtattattcttcattgctgttagcaaatactgccct 360
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acatttat--aaaaaaaaaaacaagtattattcttcattgctgttagcaaatactgccct 219

                             
Query: 361 aatccactgttcaggtta 378
           ||||||||||||||||||
Sbjct: 218 aatccactgttcaggtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 779
Length adjustment: 9
Effective length of query: 372
Effective length of database: 770
Effective search space:   286440
Effective search space used:   286440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)