Query= MSMg01no192_h05.b1 MSMg01no192_h05.b1 CHROMAT_FILE:
MSMg01no192_h05.b1 PHD_FILE: MSMg01no192_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:49 2005
(418 letters)
>mm_chr4_122967497_122968314
Length = 818
Score = 453 bits (234), Expect = e-131
Identities = 243/246 (98%)
Strand = Plus / Plus
Query: 171 aagaaacaagggcaaatgtagagtggtggatattgagtccaggccttttttctcttggct 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aagaaacaagggcaaatgtagagtggtggatattgagtccaggccttttttctcttggct 430
Query: 231 tcatcttagccttttcctttttgtaaggttaccccagaaacttggttggattttttgacc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcatcttagccttttcctttttgtaaggttaccccagaaacttggttggattttttgacc 490
Query: 291 agatgcagtacctgtttctgcctcagacccatctggggaggtttttctccagctgagtta 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agatgcagtacctgtttctgcctcagacccatctggggaggtttttctccagctgagtta 550
Query: 351 gtaacaagaagccatcttgttctgtggtcgatgaggcatcactaactgttctgttctttg 410
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 551 gtaacaagaagccatcttgagctgtggtcgatgaggcgtcactaactgttctgttctttg 610
Query: 411 gtgata 416
||||||
Sbjct: 611 gtgata 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_h05.g1 MSMg01no192_h05.g1 CHROMAT_FILE:
MSMg01no192_h05.g1 PHD_FILE: MSMg01no192_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:50 2005
(376 letters)
>mm_chr4_123092435_123093209
Length = 775
Score = 677 bits (350), Expect = 0.0
Identities = 373/388 (96%), Gaps = 12/388 (3%)
Strand = Plus / Minus
Query: 1 tttgagctctataatcaactaactgaaagctaatttgaaatgtagcttgaacacatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tttgagctctataatcaactaactgaaagctaatttgaaatgtagcttgaacacatccat 691
Query: 61 tttgtggtttcagggtggagacggcatcagaagaggttctctgaagctcccttgtgtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttgtggtttcagggtggagacggcatcagaagaggttctctgaagctcccttgtgtttc 631
Query: 121 tcacttaaaaagtttagtggggcatgtgagatgtacagatgcttttttttttgt------ 174
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 tcacttaaaaagtttagtggggcatgtgagatgtacagatgctttttttttttttttttt 571
Query: 175 ------ttttgttttagttatcagggcagcaagagaaaaccaaatcaggtatttacatca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttttgttttgttttagttatcagggcagcaagagaaaaccaaatcaggtatttacatca 511
Query: 229 gtcactaagatggctactggcagaattccaaaactaaaactaaagagaaactcatggaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtcactaagatggctactggcagaattccaaaactaaaactaaagagaaactcatggaca 451
Query: 289 gacataaagaaaagagaccttgtgctttctctccttgcttttattcaacacacacaccaa 348
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 450 gacataaagaaaagagaccttgtgctttctctccttgcttagattcaacacacacaccaa 391
Query: 349 tgataaaaatgaataaaacttttgggcg 376
||||||||||||||||||||||||||||
Sbjct: 390 tgataaaaatgaataaaacttttgggcg 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 775
Length adjustment: 9
Effective length of query: 367
Effective length of database: 766
Effective search space: 281122
Effective search space used: 281122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
