BAC Information

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BAC

Clone NameMSMg01-193B09
Chromosome4 (Build37)
Map Location 152,202,399 - 152,202,627
singlet/doubletsinglet
Overlap genenone
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193B09.T7 (MSMg01no193_b09.b1)MSMg01-193B09.TJ (MSMg01no193_b09.g1)
ACCAG382536AG382537
length733725
length of high quality
(start - end)
73 (106 - 178)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no193_b09.b1 PHD_FILE: MSMg01no193_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:19 2005CHROMAT_FILE: MSMg01no193_b09.g1 PHD_FILE: MSMg01no193_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATATTTCCGAGGATCCGCGGAATTCACCATCCTTACTCTAACA
CCTGTAAACAAGCAATGCAAAATTACTAAACAATCTTTGCGGGCATCATT
ACCGAACATGGCTGTGTTTCCCCTGCTGGCCCCAATGGAATATCGAAGGT
CCCTGCAAGAGGAAAGCATGAGGACCGGTACCAGAAATATGGCACGATGC
TACCATGTCAGTAACAAAAGACGCGGCTTCTAAGACATATAGATAGGAAA
AATCAGGTGCTCCGATTTTATTATGTTCCAGTATGTTATGCTGAAACTTT
TTTTTTGTTTGCTACTGATAGGTATGGTCCTCAGAAGTGCTTGTTTTTTC
TCCTCCCCCCCCCCCCCCTCTAGATTACTCCCCTTCCCCTTTTTTTCTCC
CACATTCTCCATAATCTCTCATTTTTCCCCGTTTCCTCTCTCTGTTTTCC
TACCCTCAACCCCTTTTTTTCCTCTCTCCTTTGCTTTTCCCTCTTTTCCC
TTTTTCCCTTTTTTCTTTTTCTTTTCCCTTCTACTTTCCCTCTTCCTTCC
CTTCCTCTTTTTTTTCCCCTTTTCCCTCCCCTTTTTTCCCTCCTCCTTTT
CCTTCTTCTCCCTTTATCCCCCTTTTTCCTCTTATTTCTTTTCCTCCCTT
TCTCTTTTTTTTTCCCCTCTCCTTTTCTTTTTTTCTCTTTACTTTTTCCC
CCTTTTCCCCTCTTTTTGCTCCTTCCTTTTTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCACAATTCTGTTTCCCTTCAT
AGTCATGATGTGAGCAGCTTGCCACGTGCTCCTTCCATGATGGAACGCCA
CAGGCCCAAAGCAAGAGAAACAGCGGATCACTGCCTGAGACCTCTGAAAC
TGTGAGCCAAAAGAAAACACATGCTTCCTTCTGCAGGTTGAGTCCTTAAG
ACTTGTCAGTGGGACTTAAATCTGTCGACCACATGCAATGTTCACTTACA
GGCCACTCAGGCCATGCTGATCCTGAGCTAGGTGCCATGGAAGGTGCCAC
AGGAAAAGACCTCTTTTCTCCACTCCCCCCCCCGGCTTCAGCAGGGCAAA
GGTCAAGTTCAAGGTTCACCCCCACCCACAATGTTGGGAATTAAGTTCTG
AAGTCCGCTGCAATCTTGCTTTGTAAACTGGCTACCCTACACCCCTCTTC
TGCAGAGGCCTGATAGAGAACGGAGTCCCTAGAGGTTGGGAGGACATCTG
GAGGGGATCAGTGTTCACTCACAGTCTTCTATCAGGTCTGCCAGCAATCT
CACAGTCAAGAGCGAATTTTGTAGTCTTTGTTATTCAGCATGAAGTTTCT
GTTTGTGATGCAGGGCTCTTAGTCCTATATTCCTTTACATGCTGTATTCT
TACGTCCTTTATTACCATTATGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_b09.g1 MSMg01no193_b09.g1 CHROMAT_FILE:
MSMg01no193_b09.g1 PHD_FILE: MSMg01no193_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:19 2005
         (286 letters)



>mm_chr4_152202199_152202884
          Length = 686

 Score =  389 bits (201), Expect = e-112
 Identities = 222/229 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcacaattctgtttcccttcatagtcatgatgtgagcagcttgccacgtgctcctt 60
           |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cagggcacaattctatttcccttcatagccatgatgtgagcagcttgccacgtgctcctt 260

                                                                       
Query: 61  ccatgatggaacgccacaggcccaaagcaagagaaacagcggatcactgcctgagacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgatggaacgccacaggcccaaagcaagagaaacagcggatcactgcctgagacctc 320

                                                                       
Query: 121 tgaaactgtgagccaaaagaaaacacatgcttccttctgcaggttgagtccttaagactt 180
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 321 tgaaactgtgagccaaaagaaaacacatgcttctttctgcaggttgagtccttaagacct 380

                                                            
Query: 181 gtcagtgggacttaaatctgtcgaccacatgcaatgttcacttacaggc 229
           ||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct: 381 gtcagtgggacttgaatctgttgatcacatgcaatgttcacttacaggc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)