BAC Information

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BAC

Clone NameMSMg01-193D06
Chromosome4 (Build37)
Map Location 32,670,056 - 32,670,446
singlet/doubletsinglet
Overlap genenone
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2
Downstream geneGja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193D06.T7 (MSMg01no193_d06.b1)MSMg01-193D06.TJ (MSMg01no193_d06.g1)
ACCAG382608AG382609
length768806
length of high quality
(start - end)
499 (45 - 543)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no193_d06.b1 PHD_FILE: MSMg01no193_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:30 2005CHROMAT_FILE: MSMg01no193_d06.g1 PHD_FILE: MSMg01no193_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGA
ATTCCACTTAAAGAATTTCGATTCTGGTCCCCAGTGAGGTCTCCTTTTGA
ATCAACTCAGAAACAATTTTGATAAGCAATGGTTTGGAACAGTAAAAGAC
ACGGACATGTCCCCTGAGCAACTACACAAAGCCAGTTGCTGTTCCTGGTG
GATACTGAATAAAATTACTTGTTAAAAATACCAAAGAACCCGGGCGGTGG
TGGTGCACGCCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGCGGATTT
CTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTCCAGGACAGCCAGG
GCTATACAGAGAAACCCTGTCTCAAAAAACAAAGACAAAACCAAAACAAA
ACACCCCAAAAACCAACCAAACTAAAAAAAAAAAAAAAAAAACAACAACA
AAGAAATAGGAGTTTTTAGAGTCCTTTGAAAATGCTAGTTTCCATGGCAC
AGATGGGGTGGAAGAGGAAAAGAAAACGAGGAAGATGAGGGCTGAGTTAG
GGCATAGAGAAACGAGGAGACCCGACACCCTGGCCCCCACCCTGGAAGTG
GCTGCCATGGGTCTGATCTACTGGCATCATAAACGTACTGTTTAAATTGT
GTAATGTGGTAAGACCTCCAGCTGCTTACGGCTTGTGAAAACATAAAAAC
ATGCATAGAGGCTTTTCCGCTCTGATGATGCCCTGACAATAATATATGCC
TTTTGTTTTCTTCAAAAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCGTCTTGTATGTTCATGGGC
ATCTCTTTCTTTAGGTTAGAGAGGTTTTCTTCTATAATTTTGCTGAAGAT
ATTTACCGGCCCTTTAAGTTGGGAATGTTTGCTCTCTTCTATACCTTTTA
ACCTTAGGTTTCATCTTCTCATTGTGTCATGGATTTCCTGGATGTTTTTG
GGTTAGGAGAGTTTTGCTTTTTGTGTTTTGACTGTTGTGTCAATGTTTTC
TATGGTATCTTCTGCACCTGAGATTCTCTCTTCTATTTCTTGTATTCTGT
TGGAGATGCTTGCATCTATGGCTCCTGATCTCTTTCCTAGGTTCTCTATC
TCCAGGGTTGTCTCCCTTTGTGATTTCTTTATTGTTTCTATTTCCATTTT
TAGATGCTGAATGGTTTTGTTCCATTCTTTCACCTGTTTGGCTATGTTTT
CCCTGAAATTCTTTAAGATATTTTTGTGTTTCCCCTTTAATTGTTTCATG
CTGCTTTTACCTATGCTCTTCTTGTATTCTCCTTACTGAATTCTATTAAA
GTCCATTCTTATTGACTCATTTCCAATCTTCATATTAAATTCGTATTTCT
ACATCCCCTTATTATTGTTTCCCCTCCGAGTAGACTGCTTGCCCTTCTCG
TCATTCTCTACTACGAGTTATCATTTTCGTCATTCATGTATATTATCTCT
ATCCACACCTCTGACTCTCTCGCACGAATCATCTCTACCACCTTCTCTCT
TTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_d06.b1 MSMg01no193_d06.b1 CHROMAT_FILE:
MSMg01no193_d06.b1 PHD_FILE: MSMg01no193_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:30 2005
         (499 letters)



>mm_chr4_32670053_32670951
          Length = 899

 Score =  719 bits (372), Expect = 0.0
 Identities = 387/392 (98%), Gaps = 2/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacttaaagaatttcgattctggtccccagtgaggtctccttttgaatcaactc 64
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaattccacttaaagaacttagattctggtccccagtgaggtctccttttgaatcaactc 335

                                                                       
Query: 65  agaaacaattttgataagcaatggtttggaacagtaaaagacacggacatgtcccc-tga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 334 agaaacaattttgataagcaatggtttggaacagtaaaagacacggacatg-ccccgtga 276

                                                                       
Query: 124 gcaactacacaaagccagttgctgttcctggtggatactgaataaaattacttgttaaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcaactacacaaagccagttgctgttcctggtggatactgaataaaattacttgttaaaa 216

                                                                       
Query: 184 ataccaaagaacccgggcggtggtggtgcacgcctttaatcccagcacttgggagacaga 243
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ataccaaagaagccgggcggtggtggtgcacgcctttaatcccagcacttgggagacaga 156

                                                                       
Query: 244 ggcaggcggatttctgagttcgaggccagcctagtctacagagtgagttccaggacagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggcaggcggatttctgagttcgaggccagcctagtctacagagtgagttccaggacagcc 96

                                                                       
Query: 304 agggctatacagagaaaccctgtctcaaaaaacaaagacaaaaccaaaacaaaacacccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  agggctatacagagaaaccctgtctcaaaaaacaaagacaaaaccaaaacaaaacacccc 36

                                           
Query: 364 aaaaaccaaccaaactaaaaaaaaaaaaaaaa 395
           ||||||||||||||||||||||||||||||||
Sbjct: 35  aaaaaccaaccaaactaaaaaaaaaaaaaaaa 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)