Query= MSMg01no193_g03.b1 MSMg01no193_g03.b1 CHROMAT_FILE:
MSMg01no193_g03.b1 PHD_FILE: MSMg01no193_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:46 2005
(416 letters)
>mm_chr4_86254320_86255137
Length = 818
Score = 752 bits (389), Expect = 0.0
Identities = 400/405 (98%), Gaps = 4/405 (0%)
Strand = Plus / Minus
Query: 5 gaattcagatcttcaggcttgcatttctgggaggcaagttcctttccttaggtgtctcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaattcagatcttcaggcttgcatttctgggaggcaagttcctttccttaggtgtctcat 733
Query: 65 ctattcttgatttttctcaatatttgtgtggagtcaagtctttcctgccaccatgtgggt 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctattcttgatttctctcaatatttgtgtggagtcaagtctttcctgccaccatgtgggt 673
Query: 125 gtcccagggatggaactcaggtagtaaggcttagtggcaagcacctttacctgctgagcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtcccagggatggaactcaggtagtaaggcttagtggcaagcacctttacctgctgagcc 613
Query: 185 acctagaacagacttctaaccaaagcactacatatgctaatagtagtaactactagacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acctagaacagacttctaaccaaagcactacatatgctaatagtagtaactactagacaa 553
Query: 245 ttaccaaatcaaacttaactataactttgagggtgaatatcat---atgtttacttaaaa 301
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 552 ttaccaaatcaaacttaactataactttgagggtgaatatcatatcatgtttacttaaaa 493
Query: 302 acaacaaattctgttcacatctgtggcagacttttttgtttgtaattctatgagtttata 361
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 492 acaacaaattctgttcacatctgtggcagac-tttttgtttgtaattctatgagtttata 434
Query: 362 gtttatatgggcatatgttaacttctgttcttataaattgtttca 406
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtttatatgggcatatgttaacttctgttcttataaattgtttca 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 818
Length adjustment: 9
Effective length of query: 407
Effective length of database: 809
Effective search space: 329263
Effective search space used: 329263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_g03.g1 MSMg01no193_g03.g1 CHROMAT_FILE:
MSMg01no193_g03.g1 PHD_FILE: MSMg01no193_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:46 2005
(380 letters)
>mm_chr4_86221284_86222064
Length = 781
Score = 710 bits (367), Expect = 0.0
Identities = 376/379 (99%), Gaps = 1/379 (0%)
Strand = Plus / Plus
Query: 1 caagggtcgcaaaggagtagccgacgttctcgcgatgtcgccaccggaagtgggtggcgg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagggtctcaaaggagtagccgacgttctcgcgatgtcgccaccggaagtgggtggcgg 260
Query: 61 caggccctcggagttctcgcgagatgccggcgggaagtgggtggcggccgggccggagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 caggccctcggagttctcgcgagatgccggcgggaagtgggtggcggccgggccgaagct 320
Query: 121 gatcacatcactggtctgctctcgctagctcggagcgg-tgtggccattgcctcgggcgc 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gatcacatcactggtctgctctcgctagctcggagcggctgtggccattgcctcgggcgc 380
Query: 180 tgttttctgagacctcgcctcgccgcggtctttcctgcccccagctcgcgtgcacggcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttctgagacctcgcctcgccgcggtctttcctgcccccagctcgcgtgcacggcct 440
Query: 240 ccgctgccggtcggtgctcggtgtcccgccgtccccatccttggtcggtccgccgttagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgctgccggtcggtgctcggtgtcccgccgtccccatccttggtcggtccgccgttagg 500
Query: 300 ccgtgcctcaggcccagtccgtggcgacgccggcaggtgatgcccaatacagccatgaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgtgcctcaggcccagtccgtggcgacgccggcaggtgatgcccaatacagccatgaag 560
Query: 360 aaaaaggtgctgttgatgg 378
|||||||||||||||||||
Sbjct: 561 aaaaaggtgctgttgatgg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 781
Length adjustment: 9
Effective length of query: 371
Effective length of database: 772
Effective search space: 286412
Effective search space used: 286412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
