Query= MSMg01no193_p24.b1 MSMg01no193_p24.b1 CHROMAT_FILE:
MSMg01no193_p24.b1 PHD_FILE: MSMg01no193_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:45 2005
(680 letters)
>mm_chr4_108746369_108747448
Length = 1080
Score = 1245 bits (644), Expect = 0.0
Identities = 666/676 (98%), Gaps = 5/676 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggccagctacggctatataataagactttgtctcaaaaaaaaaaaaaaattg 64
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 210 gaattccaggccagctagggctatataataagactttgtctcaaaaaaaaaa-----ttg 264
Query: 65 tcagggcaagcaattatgtaaagtataaaaacatcaaccaaaattctcataatacagaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagggcaagcaattatgtaaagtataaaaacatcaaccaaaattctcataatacagaca 324
Query: 125 cttagaatgctacagaacactgtctttttacatatcattgtgaacgatgtacattataga 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 cttagaatgctacagaacactgtctttttacatatcattgtgaacgatatacattataga 384
Query: 185 ctctagttaaatagtttactgttgtcatttttcaatctgtaagaaccttaactatttccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctagttaaatagtttactgttgtcatttttcaatctgtaagaaccttaactatttccc 444
Query: 245 agcagaaatgctccacagtgcacggtgctcacacccctgccctgcagcacacagcctccc 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcagaaatgctccgcagtgcacggtgctcacacccctgccctgcagcacacagcctccc 504
Query: 305 accaatgcccagcaccagagcagcagacagacccaacctctgcttctatagatcacccag 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 accaatgcccagcaccagagcagcagacagatccaacctctgcttctatagatcacccag 564
Query: 365 agcactcagttcaggcttcaccccactgttaaacaccgaagtacgtgagacacgtgaaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcactcagttcaggcttcaccccactgttaaacaccgaagtacgtgagacacgtgaaca 624
Query: 425 atggcatgtgcagacgactttcaccacctaaaaatctcctgggctctgctgaaattaata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atggcatgtgcagacgactttcaccacctaaaaatctcctgggctctgctgaaattaata 684
Query: 485 tattaaaaattaagattagagtatgcatgtatcctacattaaaaatagttgcctaggtga 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 tattaaaaattaagattagagtatgcatgtatcctaaattaaaaatagttgcctaggtga 744
Query: 545 ccttgtttcaattattttgcaaaaaatccttaggtaattagttacgtactgcttcttggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccttgtttcaattattttgcaaaaaatccttaggtaattagttacgtactgcttcttggc 804
Query: 605 taatttagcattaatatgtatcataaggggctataaagcatatgtcactaattttaagaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taatttagcattaatatgtatcataaggggctataaagcatatgtcactaattttaagaa 864
Query: 665 gcaatggaatgaatga 680
||||||||||||||||
Sbjct: 865 gcaatggaatgaatga 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_p24.g1 MSMg01no193_p24.g1 CHROMAT_FILE:
MSMg01no193_p24.g1 PHD_FILE: MSMg01no193_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:45 2005
(643 letters)
>mm_chr4_108830276_108831318
Length = 1043
Score = 969 bits (501), Expect = 0.0
Identities = 579/643 (90%), Gaps = 60/643 (9%)
Strand = Plus / Minus
Query: 1 agcgtcatccttggctacttagaattaggtcaacttgagctatatgagaccctgtattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 978 agcgtcatccttggctacttagaattaggtcaacttgagctatatgagaacctgtattaa 919
Query: 61 aagaaaagaaaattcacatactgtagagtatattgatttaactatgtggttaatgttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 aagaaaagaaaattcacatactgtagagtatattgatttaactatgtggttaatgttttg 859
Query: 121 gtatattcttaggcttgtgcaaccagcacaatagtatggtcaattttagaatgttttcat 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gtatattcttaggctagtgcaaccagcacaatagtatggtcaattttagaatgttttcat 799
Query: 181 cagtgagaagaaataaatgccagccaggtatagtggtatatgcctgtgattccagtggga 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 caatgagaagaaataaatgccagccaggtatagtggtatatgcctgtgattccagtggga 739
Query: 241 gactgagacacaagaattacttgagcccaggagtttgaggccttctgggcaagactgtag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gactgagacacaagaattacttgagcccaggagtttgaggccttctgggcaagactgtag 679
Query: 301 caccttgtctccaaaacagcctccctgcccctacttactagcatttagtccctattcacc 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 678 caccttgtctccaaaacagcctccctgcccctatttactagcatttagtccctattcacc 619
Query: 361 ctgccctcaagggaatgctagacttctttccatctgtgtgtttgtccgtgtggttatttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgccctcaagggaatgctagacttctttccatctgtgtgtttgtccgtgtggttatttc 559
Query: 421 cttagtgacaagcttctttgatactgtttccaaggttcctagactaagtctgtagacatt 480
|||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttagtgacaagcttctttgatactgtttccaaggttcc--------------------- 520
Query: 481 tccttatttaagaatggtgacaacatttcttatccattctgacgtagagagcactcttgg 540
||| | |||||||||||||||||
Sbjct: 519 --------------------------------tcc-----g--gtagagagcactcttgg 499
Query: 541 tagtgcgctgcactcttctttttatctgttctggaactcaagggccttaaaggcaagggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagtgcgctgcactcttctttttatctgttctggaactcaagggccttaaaggcaagggc 439
Query: 601 cgcggttacgtgtctcagagcttcatctagcgacatgctcgtc 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgcggttacgtgtctcagagcttcatctagcgacatgctcgtc 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
