Query= MSMg01no194_g08.b1 MSMg01no194_g08.b1 CHROMAT_FILE:
MSMg01no194_g08.b1 PHD_FILE: MSMg01no194_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:15 2005
(665 letters)
>mm_chr4_44353754_44354818
Length = 1065
Score = 890 bits (460), Expect = 0.0
Identities = 495/514 (96%), Gaps = 12/514 (2%)
Strand = Plus / Minus
Query: 152 taagaacataaactcaaccccctgtgacaatcagttgttaaaagctctcctctgagcacc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 taagaacataaactcaaccccctgtgacaatcagttgttaaaagctctcctctgagcacc 1006
Query: 212 tgcatgctgtggcacgagtgcacacatgcaagcatgagacacacgcacacagacaaacaa 271
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1005 tgcatgctgtggcacgagtgcacacacacaagcatgagacacacgcacacagacaaacaa 946
Query: 272 accctcttctggtgtgtctgaaaacacctgcagtgtactcatacacataaaataaataag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 accctcttctggtgtgtctgaaaacacctgcagtgtactcatacacataaaataaataag 886
Query: 332 tcagacaaacaaataaacaaacaaataaacaagtgatataaaatagatttcaagtatgga 391
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcag------------acaaacaaataaacaagtgatataaaatagatttcaagtatgga 838
Query: 392 agagagaattaaagagaaaacaaatctgttaggagtctaagaggaacgacatgttgttta 451
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 837 agagagaattaaagagaaaacaaatctcttaggagcctaagaggaacgacatgttgttta 778
Query: 452 caatacagaaactccatcactatcaacagtcacgacagaggaaacacataaaagaatcac 511
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 777 caatacagaaactccatcactatcaacagtcgcgacagaggaaacacgtaaaagaatcac 718
Query: 512 aatttgcttaaaacctactctagtagagtttacgttgctcgagctttgacaactgcagaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aatttgcttaaaacctactctagtagagtttacgttgctcgagctttgacaactgcagaa 658
Query: 572 acctaaatctcaacagtgagataagcatgaaagtgttcatattcaagtagtccctgtcat 631
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 657 acctaaatctcaacagtgaggtaagcatgaaagtgttcatattcaagtagtccctgtcat 598
Query: 632 ataaaatgcagaacatcatgtattcacaggcctg 665
||||||||||||||||||||||||||||||||||
Sbjct: 597 ataaaatgcagaacatcatgtattcacaggcctg 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_g08.g1 MSMg01no194_g08.g1 CHROMAT_FILE:
MSMg01no194_g08.g1 PHD_FILE: MSMg01no194_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:15 2005
(403 letters)
>mm_chr4_44303288_44304090
Length = 803
Score = 681 bits (352), Expect = 0.0
Identities = 393/414 (94%), Gaps = 12/414 (2%)
Strand = Plus / Plus
Query: 1 agggccagtcaggtctacatatcaagttccaggccagcagaggctatatagcaagatcac 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 189 agggccagtcaggtctacatatcaagttccaggccagcagaggctacatagcaagatcat 248
Query: 61 gttgttgttgttgttgttgttgt------------aatgaggaggggaatggataccaca 108
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 249 gttgttgttgttgttgttgttgttgttgttgttgtaatgaggaggggaatggataccaca 308
Query: 109 gcaggagaacacttagtggagtcagctctgtccttttaccttgacctgcgttccagggat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gcaggagaacacttagtggagtcagctctgtccttttaccttgacctgcgttccagggat 368
Query: 169 tggattcaggaaacaggtctttgtggggcaaacatctttttgccagatcatctcacaggc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tggattcaggaaacaggtctttgtggggcaaacatctttttgccagatcatctcacaggc 428
Query: 229 tctaatcacaactttggtatgacttttgttcacgattttgttcctggacttaggggtcta 288
|||||||| | |||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 429 tctaatcatagctttggaaggacttttgttcacgatttcgttcctggacttaggggtcta 488
Query: 289 ggctggttccattttgactagaactcagacactggattttgaagaaacccacaactgaca 348
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 489 ggctggttccattttgactagaactcagacactgggttttgaagaaacccacaaatgaca 548
Query: 349 gtgagtatatatatatatatatatatatatatatatatatatatatatatatat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtgagtatatatatatatatatatatatatatatatatatatatatatatatat 602
Score = 95.5 bits (49), Expect = 6e-24
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 355 atatatatatatatatatatatatatatatatatatatatatatatata 403
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atatatatatatatatatatatatatatatatatatatatatatatata 554
Score = 93.5 bits (48), Expect = 2e-23
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 354 tatatatatatatatatatatatatatatatatatatatatatatata 401
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tatatatatatatatatatatatatatatatatatatatatatatata 554
Score = 89.7 bits (46), Expect = 3e-22
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 354 tatatatatatatatatatatatatatatatatatatatatatatatata 403
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tatacatatatatatatatatatatatatatatatatatatatatatata 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 9
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
