Query= MSMg01no194_l10.b1 MSMg01no194_l10.b1 CHROMAT_FILE:
MSMg01no194_l10.b1 PHD_FILE: MSMg01no194_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:40 2005
(313 letters)
>mm_chr4_119129064_119129776
Length = 713
Score = 569 bits (294), Expect = e-166
Identities = 306/310 (98%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtacatcaggctggcctcgaactcagaaatccgcctgcctctgcctcc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagatcaggctggcctcgaactcagaaatccgcctgcctctgcctcc 263
Query: 64 cgagtgctgggaccaaaggcgtgagtcatcaccgcctggctgtctgaaagtgttttttgt 123
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagtgctgggattaaaggcgtgagtcatcaccgcctggctgtctgaaagtgttttttgt 323
Query: 124 ttgccattctttttggggtcctcagtgaagatgcgctttatcttcgtgtgtgatatgctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgccattctttttggggtcctcagtgaagatgcgctttatcttcgtgtgtgatatgctg 383
Query: 184 atacctaaaacaatcccaattcccaagagctttgtcaaaggaggtttacttgaccccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atacctaaaacaatcccaattcccaagagctttgtcaaaggaggtttacttgaccccaaa 443
Query: 244 gactataccaggttaaaaagatgatacaggtacttcatggcatggctaagtttcccaaca 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 gactataccaggttaaaaagatgatacagggacttcatggcatggctaagtttcccaaca 503
Query: 304 ggccagcatg 313
||||||||||
Sbjct: 504 ggccagcatg 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_l10.g1 MSMg01no194_l10.g1 CHROMAT_FILE:
MSMg01no194_l10.g1 PHD_FILE: MSMg01no194_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:40 2005
(285 letters)
>mm_chr4_119264714_119265398
Length = 685
Score = 514 bits (266), Expect = e-150
Identities = 284/294 (96%), Gaps = 9/294 (3%)
Strand = Plus / Minus
Query: 1 ctgcctccttatttctagttgagccctaactttcctttagactatgctagccagtagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgcctccttatttctagttgagccctaactttcctttagactatgctagccagtagagt 327
Query: 61 ttttcctaagagttttatcttagttcatgtgtaccatatccatgcaggctcagagaccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttcctaagagttttatcttagttcatgtgtaccatatccatgcaggctcagagaccag 267
Query: 121 aagagcatgtcagataccctaggactagacttacaagtgatagtgagctctccaatctg- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagagcatgtcagataccctaggactagacttacaagtgatagtgagctctccaatctgc 207
Query: 180 ---caatcaatctctctctctctctctctctctctctctctctctctctctc---ccccc 233
||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 206 aatcaatcaatctctctctctctctctctctctctctctctctctctctctctctctccc 147
Query: 234 ccct--cacacacacacacacaaatcaattttaaaaaataggaacatttcataa 285
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ccctcacacacacacacacacaaatcaattttaaaaaataggaacatttcataa 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 20
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
