BAC Information

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BAC

Clone NameMSMg01-194M20
Chromosome4 (Build37)
Map Location 31,785,302 - 31,949,427
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040864, LOC100040891
Downstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194M20.T7 (MSMg01no194_m20.b1)MSMg01-194M20.TJ (MSMg01no194_m20.g1)
ACCAG383585AG383586
length748745
length of high quality
(start - end)		679 (70 - 748)518 (78 - 595)
definitionCHROMAT_FILE: MSMg01no194_m20.b1 PHD_FILE: MSMg01no194_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:47 2005CHROMAT_FILE: MSMg01no194_m20.g1 PHD_FILE: MSMg01no194_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,785,302 - 31,785,980)(31,949,105 - 31,949,427)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCTCTGTAGTTCCCANTGGCCTCAAGCTCAGAGATAAACATCTGCCTT
CCAAGTGCTGAGATTAAAGGTATGCACCACCACATCCGCCAAATGTTTTT
CTTTTTTAAAATAGCATCCCTTAAAGGCTATTAGACTGGTTGTTTTAAAG
ACATAAAGATAGAACAGTCTACGATTCAAAGCAGTAAGCCATAAATTTAT
ATATCTTTTAAACATTGCTGTGAAACATGGCTGTTTCCAGTCCATGCATG
CAGGCAAAACAGAAAGAGACCAAACAACTTCAGTCCTCCAGATCCAAACA
CAGCAGCCAGCACAGTGCAGGGCACAGAGAAGGTCAGTGTGTAAAGACTG
TGGTGGCAGAGCCAAGTTCGAGACCCAGCCTTGCTTCCAGTTTATTCAGT
GACTTCACCTCTTGGAGCCTCCCCTTCCATCTACAAAGGCAAAGGTCACA
GCCATCTCTCTCCAGATTCTGTGTTTCTGTTGTTCCCACTGGAAACCAAA
CAATGTACCTGGAGCACTAGGGTTTTGTTTGGGTCTATTTGTTGAGACAG
GGACCAAACTCCTCATCTTCCTGCCTCTACCTCCTTCATGAGTCCTTCAT
GGGCTTGCCCTCCTGCCTGGTGCACACATGAAACTGTCACTGCAGATAAT
AGTGAGAAGTCATGTCAACCAAGGCTACGCCTGTCATCACCACACAGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAGAAGTCTGGTAAGCATGT
AATATATGGCAGCCACTATGGAAATCAGTATGAAAGTTCTTCAAAAAGCT
AACGGTAAAACCCCTGGTTGATTAACTAGTCAAGTCCTGGTATATGCCCA
GAGGAATGAAAGTCAGCATGCCATGGAGATCTTGTATTGTGGTACTGTTT
ACAATAGTTTAGATGGAGAGCCAGTCTAGATGCCAACTAACAGATATATT
GAAAAAGGAAATGGGATACATATGCACAATGGAATTTTATTCAGCTATAA
AAAGGAATGAAATCATATTATTTTCAGGAAAATGAATGGGACTGGAAGAT
GATTGTATTAAAAGAACCAAGCCAGAACCATAAGATGAATATTTTTTCTT
TTCTTTTTTATCATATGTGTATCATGTGAGAGCATGCATGTTCTCATTTG
AGTGTACATGTGTGTGTGTGTGTACATGTGTATAATAATGTAGTCAGGGA
AAAAGAAAGGAAGCTGATAGGAAGTTCAGGAGAGGGTAGTGGGGAGTAAA
CTTGGTCAAAGTGCATGACATACTTGAATGAAAATGACCGCCCTTATGGA
CCCCATCATGATGCATAATACAGTGAATGCATGCTAGTGAAAACCTATAG
CAATCTTAATGTTTTTATGATATCAAAACTGAACATATTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_m20.b1 MSMg01no194_m20.b1 CHROMAT_FILE:
MSMg01no194_m20.b1 PHD_FILE: MSMg01no194_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:47 2005
         (679 letters)



>mm_chr4_31785102_31786180
          Length = 1079

 Score = 1243 bits (643), Expect = 0.0
 Identities = 670/679 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctcaagctcagagataaacatctgccttccaagtgctgagattaaaggtatgcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcctcaagctcagagataaacatctgccttccaagtgctgagattaaaggtatgcacca 260

                                                                       
Query: 61  ccacatccgccaaatgtttttcttttttaaaatagcatcccttaaaggctattagactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatccgccaaatgtttttcttttttaaaatagcatcccttaaaggctattagactgg 320

                                                                       
Query: 121 ttgttttaaagacataaagatagaacagtctacgattcaaagcagtaagccataaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttttaaagacataaagatagaacagtctacgattcaaagcagtaagccataaattta 380

                                                                       
Query: 181 tatatcttttaaacattgctgtgaaacatggctgtttccagtccatgcatgcaggcaaaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tatatcttttaaacattgctgtgaaacatggctgtttccggtccatgcatgcaggcaaaa 440

                                                                       
Query: 241 cagaaagagaccaaacaacttcagtcctccagatccaaacacagcagccagcacagtgca 300
           ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cagaaggagcccaaacaacttcagtcctccagatccaaacacagcagccggcacagtgca 500

                                                                       
Query: 301 gggcacagagaaggtcagtgtgtaaagactgtggtggcagagccaagttcgagacccagc 360
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 gggcacagagaaggtcggtgtgtaaagactgtggtggcagagccaagttcgagacctagc 560

                                                                       
Query: 361 cttgcttccagtttattcagtgacttcacctcttggagcctccccttccatctacaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgcttccagtttattcagtgacttcacctcttggagcctccccttccatctacaaagg 620

                                                                       
Query: 421 caaaggtcacagccatctctctccagattctgtgtttctgttgttcccactggaaaccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaggtcacagccatctctctccagattctgtgtttctgttgttcccactggaaaccaa 680

                                                                       
Query: 481 acaatgtacctggagcactagggttttgtttgggtctatttgttgagacagggaccaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 acaatgtacctggagcactagggttttgtttgggtctatttgttgagacagggactaaac 740

                                                                       
Query: 541 tcctcatcttcctgcctctacctccttcatgagtccttcatgggcttgccctcctgcctg 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctcatcttcctgcctctacctccctcatgagtccttcatgggcttgccctcctgcctg 800

                                                                       
Query: 601 gtgcacacatgaaactgtcactgcagataatagtgagaagtcatgtcaaccaaggctacg 660
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 gtgcacacatgaaactgtcactgcagaaaatagtgagaagtcatgtcaaccaaggctacg 860

                              
Query: 661 cctgtcatcaccacacaga 679
           |||||||||||||||||||
Sbjct: 861 cctgtcatcaccacacaga 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no194_m20.g1 MSMg01no194_m20.g1 CHROMAT_FILE:
MSMg01no194_m20.g1 PHD_FILE: MSMg01no194_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:47 2005
         (518 letters)



>mm_chr4_31948510_31949427
          Length = 918

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%)
 Strand = Plus / Minus

                                                                       
Query: 196 agtctagatgccaactaacagatatattgaaaaaggaaatgggatacatatgcacaatgg 255
           |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 918 agtctagatgcccaccaacagatatattgaaaaaggaaatgtgatacatatgcacaatgg 859

                                                                       
Query: 256 aattttattcagctataaaaaggaatgaaatcatattattttcaggaaaatgaatgggac 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aattttattcagctataaaaaggaatgaaatcatattattttcaggaaaatgaatgggac 799

                                                                       
Query: 316 tggaagatgattgtattaaaagaaccaagccagaaccataagatgaatattttttctttt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tggaagatgattgtattaaaagaaccaagccagaaccataagatgaatattttttctttt 739

                                                                       
Query: 376 cttttttatcatatgtgtatcatgtgagagcatgcatgttctcatttgagtgtacatgtg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 738 cttttttatcatatgtgtatcatgtgagagcatgcatgttctcatttgagtgtgcatgtg 679

                                                                       
Query: 436 tgtgtgtgtgtacatgtgtataataatgtagtcagggaaaaagaaaggaagctgatagga 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtgtgtgtgtacatgtgtataataatgtagtcagggaaaaagaaaggaagctgatagga 619

                                  
Query: 496 agttcaggagagggtagtgggga 518
           |||||||||||||||||||||||
Sbjct: 618 agttcaggagagggtagtgggga 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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