Query= MSMg01no194_p17.b1 MSMg01no194_p17.b1 CHROMAT_FILE:
MSMg01no194_p17.b1 PHD_FILE: MSMg01no194_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:02 2005
(287 letters)
>mm_chr4_75683111_75683798
Length = 688
Score = 472 bits (244), Expect = e-137
Identities = 275/288 (95%), Gaps = 9/288 (3%)
Strand = Plus / Plus
Query: 5 gaattcaattcctagcaatcacatagtggctcacaaccatctgtaatggaatctggtgcc 64
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcaattcccaggaatcacatagtggctcacaaccatctgtaatgggatctggtgcc 264
Query: 65 ctcttctgtctggtgcgtgtgaggacagctacagtgcactcatatgcattaaataaataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcttctgtctggtgcgtgtgaggacagctacagtgcactcatatgcattaaataaataa 324
Query: 125 ataaataaataaataaataaataaataaata--aataactaatgaaaaa--aaaaaacaa 180
||||||||||||||||||||||||||||||| || || || ||||| |||||||||
Sbjct: 325 ataaataaataaataaataaataaataaatattaaaaa--aa--aaaaacaaaaaaacaa 380
Query: 181 gagtcactccagtcttagtttcccagaatgcttgaagaagaaatagaacatattacttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcactccagtcttagtttcccagaatgcttgaagaagaaatagaacatattacttag 440
Query: 241 cccatttgcaagggaaaaaa-tccatctctttgtcttttaccaaatag 287
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 cccatttgcaagggaaaaaaatccatctctttgtcttttaccaaatag 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no194_p17.g1 MSMg01no194_p17.g1 CHROMAT_FILE:
MSMg01no194_p17.g1 PHD_FILE: MSMg01no194_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:02 2005
(286 letters)
>mm_chr4_75805590_75806275
Length = 686
Score = 545 bits (282), Expect = e-160
Identities = 285/286 (99%)
Strand = Plus / Minus
Query: 1 catgataatttccataatagctaaaatagtttacattcaaaacgtggcgggattcttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 catgataatttccataatagctaaaatagtttacattcaaaacgtggcgggattcttgac 427
Query: 61 agaaattgtgttgaacactatgtgtatttctagtcatgcgtctcagtgtgtaggggatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agaaattgtgttgaacactatgtgtatttctagtcatgcgtctcagtgtgtaggggatac 367
Query: 121 cttgtttctcaatatgtctagtcaactcatgtttgtaggacttacagtatttgagaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttgtttctcaatatgtctagtcaactcatgtttgtaggacttacagtatttgagaaata 307
Query: 181 agatgtgcatatgtgatgggaaatatagtgtgagcctcataaatatgatatatttacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agatgtgcatatgtgatgggaaatatagtgtgagcctcataaatatgatatatttacata 247
Query: 241 taatgggtttttattatgtaacacagcctgacctgaaactcttgat 286
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taatggggttttattatgtaacacagcctgacctgaaactcttgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
