BAC Information

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BAC

Clone NameMSMg01-195J21
Chromosome4 (Build37)
Map Location 84,435,974 - 84,436,215
singlet/doubletsinglet
Overlap genenone
Upstream gene4930473A06Rik, LOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284
Downstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195J21.T7 (MSMg01no195_j21.b1)MSMg01-195J21.TJ (MSMg01no195_j21.g1)
ACCAG384066AG384067
length739734
length of high quality
(start - end)
697 (43 - 739)256 (73 - 328)
definitionCHROMAT_FILE: MSMg01no195_j21.b1 PHD_FILE: MSMg01no195_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:53 2005CHROMAT_FILE: MSMg01no195_j21.g1 PHD_FILE: MSMg01no195_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGAGGACTACCGAATGGCTGAGAAGCACCTAAAAAAAAAATGT
TCAACATCCTTAATCAGCAGAGAAATGCAAATCAAAACAATCCTGAGATT
CTACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAGCA
GATGCTGGCGGGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTTAG
AAAATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCAGTAATAAGAACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTTGTATATTTACACAATGG
AGTACTAGTCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTTAGGTAACCCAATATCAAAA
GAACTCAGACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGAATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAG
AAGAACGAAGACCAAAGTGTGGACAGTTTGCCCCTTCTN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCCTCATTGGGGTAAGGATCATGAATG
GACTTCATATAGAACTGTCATGGGACCTGATCTTCCAGTCCTCCTTTTTT
GTACATAGAGGCATAAAACTAAGTTTAGGCCCATTGAACTTAGGTAGGAA
CAGTGTACATCACTCTAGGATGATGGCTTTCAACCTGTGGGTTGCATATC
AGATATACTGCACACTGGATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATGAAGATATACTACTGTTAAGAAGTAG
CAACAAAATAATCTTATAGTGAGAGTCACATCATGAGGAACTGTATCAAA
GGATCATACGATTGAGAACCACATTTTCAGAGTAGAGTGAATGACAATTT
CATTAGCAAATTATACTTTTGGATAATAATTACTTAACTTTACTAGAATA
TATTGATCATATAACAAAATGGGGGTTATTGTGATAACTTCAAGCATGCA
TGCATGCATAGACACATTATGATGATACTTGCCCCCTCTAGGACCCTCTT
GTTGCTCCCCTAGCTTCCTTCCTCTTCCAAATCATTCTTCTCTTTTCATG
TCTTTTCTTTTTCTTTCTCTTTTTTTTCTCTGCCGCTCTGTACCGAACCC
AGGGCCCCCCCCTTGCTAGGCAGGTGACTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_j21.g1 MSMg01no195_j21.g1 CHROMAT_FILE:
MSMg01no195_j21.g1 PHD_FILE: MSMg01no195_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:53 2005
         (256 letters)



>mm_chr4_84435774_84436429
          Length = 656

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctcattggggtaaggatcatgaatggacttcatatagaactgtcatgggacctgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctcattggggtaaggatcatgaatggacttcatatagaactgtcatgggacctgatc 260

                                                                       
Query: 61  ttccagtcctccttttttgtacatagaggcataaaactaagtttaggcccattgaactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccagtcctccttttttgtacatagaggcataaaactaagtttaggcccattgaactta 320

                                                                       
Query: 121 ggtaggaacagtgtacatcactctaggatgatggctttcaacctgtgggttgcatatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaggaacagtgtacatcactctaggatgatggctttcaacctgtgggttgcatatcag 380

                                                                       
Query: 181 atatactgcacactggatatatatatatatatatatatatatatatatatatatatatat 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcctgcacactggatatatatatatatatatatatatatatatatatatatatatat 440

             
Query: 241 at 242
           ||
Sbjct: 441 at 442



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 207 atatatatatatatatatatatatatatatatatatatatatatat 252
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatatatat 397



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 205 atatatatatatatatatatatatatatatatatatatatatatat 250
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatatatat 397



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 203 atatatatatatatatatatatatatatatatatatatatatatat 248
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatatatat 397



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 201 atatatatatatatatatatatatatatatatatatatatatatat 246
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatatatat 397



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 199 atatatatatatatatatatatatatatatatatatatatatatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatatatat 397



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 197 atatatatatatatatatatatatatatatatatatatatatatat 242
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatatatat 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 13
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)