BAC Information

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BAC

Clone NameMSMg01-196F11
Chromosome4 (Build37)
Map Location 16,404,153 - 16,404,439
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196F11.T7 (MSMg01no196_f11.b1)MSMg01-196F11.TJ (MSMg01no196_f11.g1)
ACCAG384487AG384488
length849720
length of high quality
(start - end)
---287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no196_f11.b1 PHD_FILE: MSMg01no196_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:51 2005CHROMAT_FILE: MSMg01no196_f11.g1 PHD_FILE: MSMg01no196_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTCTTCCCCTCCCTTCCCCCTTTTTTTTTTCCCCATACCACATAA
ATCCTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGATGTAAAATTGCACATAATAATCCAATAGCTT
CCACGTCAACACATTGTATAAGATGTTTACTCGACACACATTCTTTTGAC
AATTACCAACATCTTGTGCTTCACAGATACTTCCTAATGTGCCCCATAAT
GTCATAGCTGCCCTGCATTATGATAATATTAAAATTGCACAGGATTGTAG
AATTAAACTTGATTATTTCTCCAAATTCCATTTTCCTTACTTAGCTATTC
CACATACACTTTACATGGTATCAGACATACCTCTGTTCTAGGTATAATGC
GCATACGATCAACACATATGTATTTGTAACGACCGCCATGCCTCAACTTT
CTCTTTGATTATTCCTGCCAGCTGACCCGCATGAACTGAATACTAAAGAT
TCTTACTAGTAAATTAATGTTTTAAACTATCCATACCCTAAGTCCTTCTA
GAAGACATTTTTTTTTTCCTTTCACTATTAACTCCACTGTTTTTCTCATG
TTTGTTCCACACTTTTCCAACATCATTCTCTACTCTCACCTTGTTAATTG
CACTTTTTTTTTTGTCGCATCTATCGCAGACTTTGATTAATTCCACCACC
ATATTTTCCACCTCCTCCTCTCATATACTATTTCTGACCCTACATTATGT
TATCGCTTGCCTCCTATTTCTATACTCTTATACCACTTGTTATCTTTTGA
CACACTATCCCTCTCCCTTATTTTTCCACTCCCTTAGTACTTTTCTCAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAAGGAAAGCTCCAAGCACA
GTTCTTAGAGGAAGATGGCTGTAGACTGTGGTTTGTCTGTGTCAGTTTTA
AGAAGCAGCTCCTTTTCTGGAGAAATTGAATTTATGACCCAGACTTAATT
ATAAACCCATACAGCTTTAGACTTTTCAATTCCTGGCCACTGCGACTAAG
ACAGCTACAGCTTCCCCTCCCCCCCCCCAACTTTTGGTTTCTAACAGTGA
ATACTGAATATGAAACAGCCAACTTTTGCGTAAGCCTTAATAACTTTTTG
AGAATAATTTGGAATAGCAGGCTTTATAAAATGTTAAAGGTCATCAAGAT
TTTAAAATCTAATATCACCTTTCTTAAAAAATACCAGTTAATAACCGCTG
ACTCACAGTGTGAATCATTTACTCTTCCTCTCAGACTCTGTTAAAAAAAT
GCCTTCAGTGAGTCAGGACGGGCCTTCAAGTGAAAATGATTCCAGGAGGA
AGCAGCTTTTGAAAGCTCATCAGTTAAAACATTTGCTGTTGTTTTTCAGA
ATAATCTTGCTTGATTTGTTTACTTTCTTTCCTGTAAACCTGGATTTTGG
GGACATTTCCTTAAACCTCCAGTAAACGTTTGTTTCCTTCTTTTGTTATA
CCTGCTTCTCTACTTAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_f11.g1 MSMg01no196_f11.g1 CHROMAT_FILE:
MSMg01no196_f11.g1 PHD_FILE: MSMg01no196_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:51 2005
         (287 letters)



>mm_chr4_16403953_16404639
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaaaggaaagctccaagcacagttcttagaggaagatggctgtagactgtggtttgtc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaaaggaaagctcccagcacagttcttagaggaagatggctgtagactgtggtttgtc 260

                                                                       
Query: 61  tgtgtcagttttaagaagcagctccttttctggagaaattgaatttatgacccagactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtcagttttaagaagcagctccttttctggagaaattgaatttatgacccagactta 320

                                                                       
Query: 121 attataaacccatacagctttagacttttcaattcctggccactgcgactaagacagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attataaacccatacagctttagacttttcaattcctggccactgcgactaagacagcta 380

                                                                       
Query: 181 cagcttcccctccccccccccaacttttggtttctaacagtgaatactgaatatgaaaca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcttcccccccccccccccaacttttggtttctaacagtgaatactgaatatgaaaca 440

                                                          
Query: 241 gccaacttttgcgtaagccttaataactttttgagaataatttggaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaacttttgcgtaagccttaataactttttgagaataatttggaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)