BAC Information

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BAC

Clone NameMSMg01-196F12
Chromosome4 (Build37)
Map Location 115,707,294 - 115,707,477
singlet/doubletsinglet
Overlap geneNsun4
Upstream geneStil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah
Downstream geneUqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196F12.T7 (MSMg01no196_f12.b1)MSMg01-196F12.TJ (MSMg01no196_f12.g1)
ACCAG384489AG384490
length768816
length of high quality
(start - end)
---187 (77 - 263)
definitionCHROMAT_FILE: MSMg01no196_f12.b1 PHD_FILE: MSMg01no196_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:52 2005CHROMAT_FILE: MSMg01no196_f12.g1 PHD_FILE: MSMg01no196_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTGCATCGCTACCTTCCCTTATTCTCCTTCTT
TACTCCCTCTTTAGTCTTTATCTGCATCTGATCACCACTTTCGGACTTTT
CGCCCTTTCCCCTCTCTATGGCCCCCCCACACTTTTCACTCTTTCCCTTT
TTTCTCTCTCCATATTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTGATAGCCATTATTAGGATTT
AGTTCATAACTAGAATCACCCTTCAAAGGGTCTTTCTTTTAGCTAGTGAT
AATTATGTGTATGCATACGTGTCTTCATATTGGCATGTGCACACTATTAG
ATGCCCACGAAGGTTAAAGATTTTGGAGCCCCCTGGACTTGGAGTTGTAG
GAAGTTTTGATATGGGCGCTGGTGACTGAACTTGGGCCCTCCACAGCAGC
AGTATGCACTCTTATTTGTTGAGCCACCCCTCCAGCCCCATCACGGACTC
TTTTTTGTATTTTTCCCCCCCCCCCCCCCAGAGAAAAAGAGGGATGTTTT
TATTTTTTTTTTTCCCCCCCCCTAAAAAAAAAAAAAAATCTTTTGCGTGG
GGCGTTTTTCCTTCCCACCTTTTTTGCTCTTTTTTGATTTTTCCCTGTTA
TTCTCCTCCATCTGCCTTTTTCCCGTTTTTTTTTTATTTTCTTTTTTTAC
CTTTTTATTTCTACTTTCATTTTTCCCTTTTTTTCTTTTTTTTGTACCTT
TACCCCTTCTCCCCCTTTCCCTTTTACTCCCTTCGTCCCTCCCTCTTTTT
CTTTAGTTATTCGAAACTCTATCAGTCAAACGTCCACCGCGCTCTCTCCA
TCTCTCCTTACTCTCTTTTCTCCCTTCCCCACTCTTTTTATCTCATTATT
TGATCACTCCCACTCGCATATTCATCAATTCTTCTCGTTCTGTTGTCATT
CTCCTCTTCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_f12.g1 MSMg01no196_f12.g1 CHROMAT_FILE:
MSMg01no196_f12.g1 PHD_FILE: MSMg01no196_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:52 2005
         (187 letters)



>mm_chr4_115707094_115707680
          Length = 587

 Score =  317 bits (164), Expect = 2e-91
 Identities = 179/184 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgatagccattattaggatttagttcataactagaatcacccttcaaagggtctttc 60
           |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||
Sbjct: 384 atttgatagccattattaggatttagctcataactagaatcaggcttcaaagggtctttc 325

                                                                       
Query: 61  ttttagctagtgataattatgtgtatgcatacgtgtcttcatattggcatgtgcacacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttagctagtgataattatgtgtatgcatacgtgtcttcatattggcatgtgcacacta 265

                                                                       
Query: 121 ttagatgcccacgaaggttaaagattttggagccccctggacttggagttgtaggaagtt 180
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ttagatgcccacggaggttaaagattttggagccccctgggcttggagttgtaggaagtt 205

               
Query: 181 ttga 184
           ||||
Sbjct: 204 ttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)