Query= MSMg01no196_g10.b1 MSMg01no196_g10.b1 CHROMAT_FILE:
MSMg01no196_g10.b1 PHD_FILE: MSMg01no196_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:56 2005
(640 letters)
>mm_chr4_65713774_65714813
Length = 1040
Score = 913 bits (472), Expect = 0.0
Identities = 472/472 (100%)
Strand = Plus / Minus
Query: 5 gaattcttccagtactgggactcccagttcacttctgtgctgtgtgaccttaactaaacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattcttccagtactgggactcccagttcacttctgtgctgtgtgaccttaactaaacc 413
Query: 65 cctctccttctctaaccatattctcatttgctgtatattcagttgtttctagagatctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cctctccttctctaaccatattctcatttgctgtatattcagttgtttctagagatctgg 353
Query: 125 tccttctgagtacctatctgatgcctattttctgagcattgctaattagttcaacagagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tccttctgagtacctatctgatgcctattttctgagcattgctaattagttcaacagagg 293
Query: 185 aaagtagggcacaaatcactctgtttaactttagtttttcaagattttggttgcttgttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaagtagggcacaaatcactctgtttaactttagtttttcaagattttggttgcttgttt 233
Query: 245 taatttgctaactcttttatattttagatttatctgttttatttgtatgagttttgcctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 taatttgctaactcttttatattttagatttatctgttttatttgtatgagttttgcctg 173
Query: 305 catgtatgtaagcatactacatgaatgtctggtgcctgtgcaggtcagaagagggcataa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 catgtatgtaagcatactacatgaatgtctggtgcctgtgcaggtcagaagagggcataa 113
Query: 365 aaatcccttcaactggagttatacagatggttgtgtatcactctctgggtaggaacaagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aaatcccttcaactggagttatacagatggttgtgtatcactctctgggtaggaacaagc 53
Query: 425 aatgagctataatgccaatcccacaattggatgattcgtatactggggtttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 aatgagctataatgccaatcccacaattggatgattcgtatactggggtttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_g10.g1 MSMg01no196_g10.g1 CHROMAT_FILE:
MSMg01no196_g10.g1 PHD_FILE: MSMg01no196_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:56 2005
(493 letters)
>mm_chr4_65641618_65642510
Length = 893
Score = 886 bits (458), Expect = 0.0
Identities = 480/493 (97%), Gaps = 9/493 (1%)
Strand = Plus / Plus
Query: 1 aaatcacagtaaactagctctgcagccaattatgaacctcgtcctttattaaagtcacga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcacagtaaactagctctgcagccaattatgaacctcgtcctttattaaagtcacga 260
Query: 61 agccttgtattaccttcctctcttgagttgaaagacaagacaaagcaggccaaggagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccttgtattaccttcctctcttgagttgaaagacaagacaaagcaggccaaggagagc 320
Query: 121 agaaaatttcagaaaggatacattacaaacaaatatgtgttcaaaaatatccacaatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agaaaatttcagaaaggatacattacaaacaaatatgtgttcaaaaatatccacagtgtg 380
Query: 181 gcgtatcaataaactacagcatcctgatatgtgcgcatttatacttcattttccaggatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgtatcaataaactacagcatcctgatatgtgcgcatttatacttcattttccaggatc 440
Query: 241 agaacgaacactcagactttaaataactcagttataaggaacataggagacttgacaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacgaacactcagactttaaataactcagttataaggaacataggagacttgacaact 500
Query: 301 atcttacttcatctaacaaaatgacgttaatagttcaaattgaacttattaaaaagtaca 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttacttcatctaacaaaatgaggttaatagttcaaattgaacttattaaaaagtaca 560
Query: 361 ttttaacataggtatatttctataatattaatatttgtattaattatagttttattcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaacataggtatatttctataatattaatatttgtattaattatagttttattcaaa 620
Query: 421 tctctctagtgtttgtgtgtgtgtgtgtngtgtgtgtgtgttaaattcntgactttgatt 480
|||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 621 tctctctagtgtttgtgtgtgtgtgtgt---------gtgttaaattcatgactttgatt 671
Query: 481 ataaaagtattct 493
| |||||||||||
Sbjct: 672 agaaaagtattct 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
