BAC Information

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BAC

Clone NameMSMg01-196H14
Chromosome4 (Build37)
Map Location 94,613,815 - 94,613,973
singlet/doubletsinglet
Overlap geneMysm1
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252
Downstream geneLOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196H14.T7 (MSMg01no196_h14.b1)MSMg01-196H14.TJ (MSMg01no196_h14.g1)
ACCAG384575
length737723
length of high quality
(start - end)
---159 (123 - 281)
definitionCHROMAT_FILE: MSMg01no196_h14.b1 PHD_FILE: MSMg01no196_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:02 2005CHROMAT_FILE: MSMg01no196_h14.g1 PHD_FILE: MSMg01no196_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCACTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCGCACTACCCTTTCATATCTCGTTTCCCT
AGATATTTTAATTTGAACCTTCTTCCCTCCGACTTCG
CGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCGCATGGTTTATTTCCTGCG
GAGTTGTTAGGTATTTAAACGTACCTTCACCAGTGATTCCAGTGCCCTCG
TCTGAGATTTGTGAGGACAGTGTTTCTCATTTGGGTATTAAGAAATCTGG
GGTTTAAAAAGAAATAGTGACAGTTATGCAAGCCCTCTTAATACTTAAAT
ATTTAAATATAAAACTTTTCTTTTTTACTAGCTTTTGGAGTGTCTAAGGA
AAACACTGAGCAAATTATTCAATTGCTTCATCGCTGAGGAGCTCTTGACT
CAATTTTTTTTTCTGCCTCCCTCCCAATTACAAAAGCAAGGAAGAGAATG
GACTGGCAGATGACCACAGAAAAAAAGAATTGTTCATGTAGTTACTTTAT
AGTAAGATGTTCTATTCTTGGTTTGCTACTGCTAATAATTGAGATTTTAA
TGTTTTATTTGTTATGTTTCTACATCCAATACATCTATTTTTTGATTTTT
CCACCTTTTGCCTATTTTTTATCCCTTCCACTACCTTTGATTTTTTTTCT
CGGAATTACTTTATTGTTCCGCGCTCTCTTCATCTCTTTTTTTTCTTCCT
TCTCTTTTTTTAATTATTATATGCCCATGAACATGCCTTCTGTTATTTGA
TGCTTTTTATTTTTTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_h14.g1 MSMg01no196_h14.g1 CHROMAT_FILE:
MSMg01no196_h14.g1 PHD_FILE: MSMg01no196_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:02 2005
         (159 letters)



>mm_chr4_94613615_94614173
          Length = 559

 Score =  308 bits (159), Expect = 1e-88
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttcaccagtgattccagtgccctcgtctgagatttgtgaggacagtgtttctcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 accttcaccagtgattccagtgccctcgtctgagatttgtgaggacagtgtttctcattt 300

                                                                       
Query: 61  gggtattaagaaatctggggtttaaaaagaaatagtgacagttatgcaagccctcttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gggtattaagaaatctggggtttaaaaagaaatagtgacagttatgcaagccctcttaat 240

                                                  
Query: 121 acttaaatatttaaatataaaacttttcttttttactag 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 acttaaatatttaaatataaaacttttcttttttactag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)