CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTATAAACATCTCAGCATAGTGAGAAGGATGAAGAACTGGAGAG
TAAAGAAGGTTTTCAAGGTAATTGGCTAATTGCTTAATTTACTGGAAATA
AAGTACCACCACCAAGTACACATGAAAAATAATAATAAGTATTATGTTTC
ACTTGGTGATGTAGGATAAGCAATAGCTACCTTATCGGAGTTACTTAGTG
AAACATACAGAAATCAGTAAAAGTGATAGGTATAAACGAGAGTCCCAAGT
AGAAAAACCTCTGACTGCTCTAATTCCACATACGAGGCAAATCAAACCCT
ATCTAGAAAAGTAATTAGAAGAAGCCAGGAAAGGTTCGTGCTCAGCCAAG
GTCTTCCAGCTCCTGCCACTCTCAGCATTAAGCACTGATTGATGGCTGGA
GGCTTTATTTCAGCTTGGCCTCTGCTGATTTCCCTTTCCATGTAATCATC
AAATGAACACTTGGTATATTCTCCACACAGGTTAAAGAAGGCCTTTACCA
TTTGTTCAATCTGTAGGAGTACATCATTAACTCCATAAATTTACAGCTTG
GCATCTATTCCATATACTCCTACAAAATTTCCCCCCTTTATAAGTTTAAT
CTTGTCCCGTCGAATAAAAATTTCCCCTTGCGACCTCCTCCCCCACATCC
TCCCTCTCCACACTGTCCGCACTTGATCTCTCAATCTTCCCTCTTCTAGT
CTCCTCTCTCCTTTCTCTTCTTTTCTTTTTCTTG

CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAGAAGCCTAGAGCTCTTC
TTAATTGAGGGGTGGGAGGGGAGGCCCCCNNNNNTTNNNTTTNTTTTTTT
TTTTTTTTCTTTCTTTCCCCCCCCTTCCCCTCTCCCTCCCCCTTCCCCCT
TTCTTTCCCTCCTTCCTCCCCTTTTCCTTTTTTTTTTTCCCCTCTTTCCT
CTCCTCCTCTTTTTCTTTTCTTCCCTTTTCTTTCCCCCTTTCCCCCCTTC
CCCCTTCCTTCTTCTTCCTTTTCCCCTCCTCTTCTTTTTTCTTCCTCTCT
CCTTCCCTTTCCCCTTCACCTCTTTTTTTTTTTCCCCCCCCCCCCCCCCC
CTCCTATCTTCGTTTCCTACATTCCATTTACCCCCTCCCCCCCCCTTAAA
AAAAAAAAACCCTTTTTCCCCCTTCTCCCCGTTACCCCTCCCCCCCCCTT
TCCCTTGCCTTCTTCTCCCCATTCCCATGTCGCCTTCATCCCGTTCCCAC
CTTATGCTCATGCGACCCTTCGTTCTCCCTTCTACCCCTTCCTTGCACGT
CTTGCTACCTCCCCCGTCTTCCCTCTCTCCTTACATTCCTGCCCTACCCT
TTTACTACTTCCCCCCAGCCTGCTCTTGTTCGCAGCGGCCGATTATTTTT
CCCTCCTCTCTTCCCTCTCTTTCTTGCTCTCTCCTCTCACTCGACTCCCT
TGTCTCCGCTTACCCTCTATATGCCCCCCTTTTCTCCCCCATTTTCCCCG
CTTACCTTCTCCTCCTCTTTCATTCCTCTTCATTTATTCCACTCTCTTCG
CCGCTTTTCN

Query= MSMg01no196_i20.b1 MSMg01no196_i20.b1 CHROMAT_FILE:
MSMg01no196_i20.b1 PHD_FILE: MSMg01no196_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:08 2005
         (468 letters)



>mm_chr4_85741104_85741971
          Length = 868

 Score =  814 bits (421), Expect = 0.0
 Identities = 454/465 (97%), Gaps = 2/465 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtataaacatctcagcatagtgagaaggatgaagaactggagagtaaagaagg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattcagtataaacatttcagcatagtgagaaggatgaagaactggagagtaaagaagg 609

                                                                       
Query: 65  ttttcaaggtaattggctaattgcttaatttactggaaataaagtaccaccaccaagtac 124
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 608 tttttaaggtaattggctaattgcttagtttactggaaataaagtaccaccaccaagtac 549

                                                                       
Query: 125 acatgaaaaataataataagtattatgtttcacttggtgatgtaggataagcaatagcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acatgaaaaataataataagtattatgtttcacttggtgatgtaggataagcaatagcta 489

                                                                       
Query: 185 ccttatcggagttacttagtgaaacatacagaaatcagtaaaagtgataggtataaacga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 488 ccttatcggagttacttagtgaaacatacagaaatcagtaaaagtgatagggataaacga 429

                                                                       
Query: 245 gagtcccaagtagaaaaacctctgactgctctaattccacatacgaggcaaatcaaaccc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 428 gagtcccaagtagaaaaacctctgactgctctaattccacatacgaggcaaatccagccc 369

                                                                       
Query: 305 tatctagaaaagtaattagaagaagccaggaaaggttc-gtgctcagccaaggtcttcca 363
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 368 tatctagaaaagtaattagaagaagccaggaaagg-tctgtgctcagccaaggtcttcca 310

                                                                       
Query: 364 gctcctgccactctcagcattaagcactgattgatggctggaggctttatttcagcttgg 423
           ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 309 gctcctggcattctcagcattaagcactgattgttggctggaggctttatttcagcttgg 250

                                                        
Query: 424 cctctgctgatttccctttccatgtaatcatcaaatgaacacttg 468
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctctgctgatttccctttccatgtaatcatcaaatgaacacttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)