Query= MSMg01no196_o18.b1 MSMg01no196_o18.b1 CHROMAT_FILE:
MSMg01no196_o18.b1 PHD_FILE: MSMg01no196_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:37 2005
(622 letters)
>mm_chr4_82403132_82404153
Length = 1022
Score = 1104 bits (571), Expect = 0.0
Identities = 607/619 (98%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaagatcattccaggatggacatgagtctctgggaaggaaaacaattcattcta 64
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagatcattctaagatggacatgagtctctgggaaggaaaacaattcattcta 264
Query: 65 cctccaagccagctcttccataaactgccagggggtgtctgcccagctgtggc-aggcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 265 cctccaagccagctcttccataaactgccagggggtgtctgcccagctgtggcgaggtaa 324
Query: 124 ctttaacccatggttaaacagagtccgtctagttctgctgtaggtgcggaagagctattt 183
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 325 ctttaacccatggttaaacagagtccgtctagttctgctgtgggtgtggaagagctattt 384
Query: 184 tattgggactgtattgtgtttacagggaggaaagggttaattgctttccctatgctggct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattgggactgtattgtgtttacagggaggaaagggttaattgctttccctatgctggct 444
Query: 244 gaccattgcagcagatggtcagcatataataaataggttgtccttgcttcctaatgaaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 gaccattgcagcagatggtcagcatataataaataggttgtccttgcttcctattgaaaa 504
Query: 304 aggttaaattagctttattgacctctgtgctttttacatattaaaaggacttaacaccta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggttaaattagctttattgacctctgtgctttttacatattaaaaggacttaacaccta 564
Query: 364 tctgcaaattatccagattttttcccccactggtgttaacggggaggaggcaactcaact 423
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 tctgcaaattatccagattttttcccc-actggtgttaacggggaggaggcaactcaact 623
Query: 424 gctgcagaggggaatccagagacaggctcttgttgagccatacagggccaggtttttcaa 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgcagaggggaatccagagacaggctcttgttgagccatacagggccaggtttttcaa 683
Query: 484 tcacccagcagcaataaaagtgcctctttacttctgagctagacctgttctgagttctgc 543
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 tcacccagcagcaataaaagtgcctctttactcctgagctagacctgttctgagttctgc 743
Query: 544 ctcttccaatccccacccactgtcgctcagctagcagctacttaggtctgaccagctgct 603
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 744 ctcttccaatccccatccactgtcgctcggctagcagctacttaggtctgaccagctgct 803
Query: 604 gtacagctctcatctggtg 622
|||||||||||||||||||
Sbjct: 804 gtacagctctcatctggtg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_o18.g1 MSMg01no196_o18.g1 CHROMAT_FILE:
MSMg01no196_o18.g1 PHD_FILE: MSMg01no196_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:37 2005
(580 letters)
>mm_chr4_82443871_82444851
Length = 981
Score = 1093 bits (565), Expect = 0.0
Identities = 577/581 (99%), Gaps = 1/581 (0%)
Strand = Plus / Minus
Query: 1 taaactgtggaatttttacttctcttgaaatgtactatgtactgtatttttagaaatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taaactgtggaatttttacttctcttgaaatgtactatgtactgtatttttagaaatctt 802
Query: 61 atttttaaataaatatttttgaaaaacataggaatgtttttatcctcttacctccttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttttaaataaatatttttgaaaaacataggaatgtttttatcctcttacctccttaat 742
Query: 121 tattaaaatcgactaatattctaagttttagaactaccatgttttaagactccccccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattaaaatcgactaatattctaagttttagaactaccatgttttaagactccccccatc 682
Query: 181 ccaaactttgtgccctttgaataaatatttaaaaattagtggccttgggctcttctaccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaactttgtgccctttgaataaatatttaaaaattagtggccttgggctcttctaccg 622
Query: 241 caatcacagaaaacaaggtataaat-ttggacttaaaattgacagcattcctaggtaagc 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 caatcacagaaaacaaggtataaatattggacttaaaattgacagcattcctaggtaagc 562
Query: 300 atattattttagagatcatctgattgctgcattcagctgtctaatgcatttgtattatgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atattattttagagatcatctgattgctgcattcagctgtctaatgcatttgtattatgc 502
Query: 360 ttgatgctgttttgtggaaatatttttcgtgaggaatagctcccacatagtgaagtgtga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgatgctgttttgtggaaatatttttcgtgaggaatagctcccacatagtgaagtgtga 442
Query: 420 agaggagtcagtctaggcactgctttaaatcttgagtttggaattactggaagccttcac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggagtcagtctaggcactgctttaaatcttgagtttggaattactggaagccttcac 382
Query: 480 tcttagggcattcccttatacagactttagggccgtctggggattagattccaagcctcc 539
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 381 tcttagggcattcccttatacagactttagggccatctggggataagattccaagcctcc 322
Query: 540 aggagctgcttactgtgaacacagtatgttagagagaatga 580
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 aggagctgcttgctgtgaacacagtatgttagagagaatga 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
