Query= MSMg01no197_a18.b1 MSMg01no197_a18.b1 CHROMAT_FILE:
MSMg01no197_a18.b1 PHD_FILE: MSMg01no197_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:47 2005
(283 letters)
>mm_chr4_12992729_12993411
Length = 683
Score = 501 bits (259), Expect = e-146
Identities = 265/267 (99%)
Strand = Plus / Minus
Query: 17 gaattctttctcaggggtaccctttccagctatatctaacgatcttaggcctttaaacac 76
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 483 gaattctttctcaggggtacccttttcagctatatctaacgatcttaggcctttaaacac 424
Query: 77 ccaagattggatctcttgctgtgtctgtcctttggttgcttttctgtttctttatcattt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccaagattggatctcttgctgtgtctgtcctttggttgcttttctgtttctttatcattt 364
Query: 137 tactttcagaggacctgacctgataccattgcataggtatttgttgggtaagttgaggaa 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tactttcagaggacctgacctgataccattgcataggtatttgttgggtaagttgaggaa 304
Query: 197 ggtggagtctgtaccacgttttgggactgaacattcaatctctccttgacaagcttctaa 256
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggtggagtctgtaccacgttttgagactgaacattcaatctctccttgacaagcttctaa 244
Query: 257 gttgtttctttgcatattcctacttgt 283
|||||||||||||||||||||||||||
Sbjct: 243 gttgtttctttgcatattcctacttgt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no197_a18.g1 MSMg01no197_a18.g1 CHROMAT_FILE:
MSMg01no197_a18.g1 PHD_FILE: MSMg01no197_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:47 2005
(333 letters)
>mm_chr4_12825312_12826043
Length = 732
Score = 605 bits (313), Expect = e-177
Identities = 328/333 (98%), Gaps = 1/333 (0%)
Strand = Plus / Plus
Query: 1 tggagctgtggctttaataaaatattaacaaatagaatctacacgcctttgacagtggtt 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 201 tggagctgtggctttaataaaatattaacaaatagaatctataggcctttgacagtggtt 260
Query: 61 gcaacgactagctagagacattctagaatctataaacaagatttctgagttcaaggccag 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gcaacgactagctagagacattctagaatctataaacaagacttctgagttcaaggccag 320
Query: 121 tctggtctacaaagtgagttctaggacagccagggctatacaaggaaaccctgtctcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtctacaaagtgagttctaggacagccagggctatacaaggaaaccctgtctcaaa 380
Query: 181 aataaaacaaaacaaacaaacaaaaaacaaaaaaaaaagttttaatgcagtctgatggga 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aataaaacaaaacaaacaaacaaaaaacaaaaaaaaa-gttttaatgcagtctgatggga 439
Query: 241 gtttgggggctcaaacttctctcatacattggagtctttttctttcaaaattattgttcc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 gtttgggggctcaaacttctctcatacattgtagtctttttctttcaaaattattgttcc 499
Query: 301 atatatgtagatatgcaaaaatatataaatata 333
|||||||||||||||||||||||||||||||||
Sbjct: 500 atatatgtagatatgcaaaaatatataaatata 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 732
Length adjustment: 9
Effective length of query: 324
Effective length of database: 723
Effective search space: 234252
Effective search space used: 234252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
