BAC Information

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BAC

Clone NameMSMg01-197N08
Chromosome4 (Build37)
Map Location 109,112,409 - 109,239,856
singlet/doubletdoublet
Overlap gene4922503N01Rik, Rnf11, 4930522H14Rik
Upstream geneLOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144
Downstream geneCdkn2c, LOC100040307, Faf1, Dmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197N08.T7 (MSMg01no197_n08.b1)MSMg01-197N08.TJ (MSMg01no197_n08.g1)
ACCAG385404AG385405
length755927
length of high quality
(start - end)		317 (45 - 361)248 (126 - 373)
definitionCHROMAT_FILE: MSMg01no197_n08.b1 PHD_FILE: MSMg01no197_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:51 2005CHROMAT_FILE: MSMg01no197_n08.g1 PHD_FILE: MSMg01no197_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,239,544 - 109,239,856)(109,112,409 - 109,112,653)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACGAGAAAACACGGCCATTTCCTGAGGGCCTAATTCACACTCTGC
CTTCTCTGAGCCTTCCAACACCCTCTAAACATACAGCGCACAACTCTACT
TCACGCGTGTGCTCGTCCTGAACCTGGGCAGAAGCATGGAGCAGCATCCA
TCCTGTACTTTAAAAGACAATTGTCACCTTATCCTGTTCTGTCCCTGACT
CAAGACTGAGGTCAGACATTACAGCAAAAAAAATTATCCAGTTTTTCTGC
CCAGTACCCAGCCTAACACCTAAGACAGGATTAATGTTTAATAAATGTTC
ATGATGTGTGTGTGGCGGGCGGGAGAAAGACANATTNNCATANNNTTTTT
TGCCTCGGGTTCCCCCCCCTCAAAAAAAAATATCGTTGTTGGGCGGATTT
TTCTCTTTCCCTCTTTGATCATCTGTATCCCTTTCTTCATTTTTTCGGCT
CACCCCTTCCATACTTATAATTATTCATCCCCTATTCTCGTCACAGTCAT
TCATTCTCTCACTCTCCTACCTATGGCTATTATTTATTTTTTATTTCCTT
AACGACAAACCTGTGTCATTTTGTTTTCTCTCTTATTCCCAATTCTTGTC
TACCTACACACCTTCCTATTATATTTCTCCACTCCCTCCTTTTTTTTATC
CCCACCCCCACTCCTCGATTCACCGTTTTTCCGTTTCCCGCCTGTTGCTA
TCAAG

TTTTTTTTACAGAACATTTTTCCTTCCTANTCANCACTCTTTCTTTCTAC
TATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCACAGCCCTTGAGAGGAAGGAG
GTAATACAATCTAGATTTTTGAGACTAGAAAACAGACCCTGAGTGGTTCT
GCAATGAATACGCAGCAAGGAATCTGGGGTGGCCTCACCCATCAGTTGTT
TCCTGAGCCCATACAGCTCGGGGTCTGAGATCCCAGCCACACCCAATGGC
CAGGCAGCTGGTAGTGGGTGAGGCTCCAGTCAAGGCATGCCCAGCTGAGT
GAATTTTATTCTATCCTTGATTCAGCTGAGGAGGCCACAGTTCAGGAGGT
TGGAGTTAATTAATGTTTTGCCCCGTTCGCCTGCGCAAGTCCCACTTTTT
CTTGATGTGTTTTCCCCCCCCCCCCGATAATGTATATTATACCTTTTGTC
GGCCCTTTCACTGTTTTCAATCTTCGTTCCGCTTTTCTACATTCTCATAT
TATTCTTGTTTTTATTTATCTTTTTACTATTCTCATACATAACATCCTTT
CTTCAATTTTCTACCTAATATTATAGTATATTGCTCTTTTTTTATTCTCT
TCCTTTCGGCAATTTTTTTGTTTCCATATTTTGTTCCTTACTTAATCTTT
TTTACTTTCTTTTTCTCCTCTATATTCACTTATTATTTATTTCTTTTCTC
TTTTTTTCTACCTTCTTTATTTATTATACATATATTATTATCGCAAAACT
TCTCTTCATTTCTTACTATTTCTATACACATACTTGTCTCGTCCCTATCA
CATTACCCCATCTCTAATCTTCTCACTATACATCTATTTATATTATTATA
CATTTCACTACTCTTTCCCTACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_n08.b1 MSMg01no197_n08.b1 CHROMAT_FILE:
MSMg01no197_n08.b1 PHD_FILE: MSMg01no197_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:51 2005
         (317 letters)



>mm_chr4_109239406_109240122
          Length = 717

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacgagaaaacacggccatttcctgagggcctaattcacactctgccttctctg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaattccacgagaaaacacagccatttcctgagggcctaattcacactctgccttctctg 392

                                                                       
Query: 65  agccttccaacaccctctaaacatacagcgcacaactctacttcacgcgtgtgctcgtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agccttccaacaccctctaaacatacagcgcacaactctacttcacgcgtgtgctcgtcc 332

                                                                       
Query: 125 tgaacctgggcagaagcatggagcagcatccatcctgtactttaaaagacaattgtcacc 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 331 tgaacctgggcagaagcatggagcagtatccatcctgtactttaaaagacaattgtcacc 272

                                                                       
Query: 185 ttatcctgttctgtccctgactcaagactgaggtcagacattacagcaaaaaaaattatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttatcctgttctgtccctgactcaagactgaggtcagacattacagcaaaaaaaattatc 212

                                                                       
Query: 245 cagtttttctgcccagtacccagcctaacacctaagacaggattaatgtttaataaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cagtttttctgcccagtacccagcctaacacctaagacaggattaatgtttaataaatgt 152

                        
Query: 305 tcatgatgtgtgt 317
           |||||||||||||
Sbjct: 151 tcatgatgtgtgt 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no197_n08.g1 MSMg01no197_n08.g1 CHROMAT_FILE:
MSMg01no197_n08.g1 PHD_FILE: MSMg01no197_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:51 2005
         (248 letters)



>mm_chr4_109112209_109112856
          Length = 648

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccacagcccttgagaggaaggaggtaatacaatctagatttttgagactagaaaacag 60
           |||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||
Sbjct: 201 tcccacagcccttgagaggaaggaggtagtacaatctatacttttgagattagaaaacag 260

                                                                       
Query: 61  accctgagtggttctgcaatgaatacgcagcaaggaatctggggtggcctcacccatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctgagtggttctgcaatgaatacgcagcaaggaatctggggtggcctcacccatcag 320

                                                                       
Query: 121 ttgtttcctgagcccatacagctcggggtctgagatcccagccacacccaatggccaggc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttgtttcctgagcccatacagctcggggtctgagatcccagtcacacccaatggccaggc 380

                                                                       
Query: 181 agctggtagtgggtgaggctccagtcaaggcatgcccagctgagtgaattttattctatc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 agctggtagtgggtgaggctccagtcaaggcatgcccagctgtgtgaattttattctatc 440

                
Query: 241 cttga 245
           |||||
Sbjct: 441 cttga 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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