BAC Information

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BAC

Clone NameMSMg01-197N16
Chromosome4 (Build37)
Map Location 67,129,429 - 67,129,670
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379
Downstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197N16.T7 (MSMg01no197_n16.b1)MSMg01-197N16.TJ (MSMg01no197_n16.g1)
ACCAG385418AG385419
length729765
length of high quality
(start - end)		684 (46 - 729)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no197_n16.b1 PHD_FILE: MSMg01no197_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:53 2005CHROMAT_FILE: MSMg01no197_n16.g1 PHD_FILE: MSMg01no197_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTATATATAGGATAATAACCATCTAACAGATGTAGGATTGGT
AAAGATCTTCTCCCAATCTCTTGGTTGCTATTTTGTCCTATTGACAGTAT
CCTTTGTCTTACAGAAGCTTTTCAATTTTATGAGATGCCATTTGTCTATA
GTTGATATTAGAGCCTGGGCCATTGGTATTCTGTTCAGGAAAATTTCCCC
TGTGCAGATGTGTTCAAGCTCTTTTCCACTTTATTTTCTATTAGTTTCAG
TGTACCTGGTTTTATGTGGAGGTCCTTGATCGACTTAAACTTGAGCTTTG
TACAAGGAGATAAGAATGGATCAATTTGCATTCTTCTACATGCTGACCAC
CCATTGAGCCAGCACTACTCACAGATGATATGATAGTATACTTAAATTAT
ACCAAAAATTTCACCAGAGAAACCCAACTGCTGATAAACTACTTCAGCAA
TGTGCTTTGGTATAAAATTAACTCAAATCAGTGGCCATTCTCTACTCAAA
GGATAAATGAGATGAGAAAGAAATTACGAAGATGACACTCTTCACAATGG
TTACAAATAATATAATACCTTGGTGTGACTTTAACCAAGCCAGTGAAAAA
TCTGTATGATGAGAACTTCAAGACTCAGAAGGAAGAAATTGGAGAAGACC
TCAGAATTTGGAAAGATCACTCATGGTCA

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTACTTTTCTATACTGTATTTTATAAT
GTCCTGAAGGAGGGAGAACACACCAGGAGTTGCACTTATAAGACAGTATT
AAAGTATTCTTCTAACAGAATCTAACCCTCTAGAAAGGTTATTAGTCTAG
ACTTTTGATAAAAGATCAATAAGGAAAGATATCCAACATGGCGTATTATG
TAGGTTAAGAACTGAGACGGATTGGGGAGAACATAGGAAAGAAAAATGAA
GTGTGCAGATCACGAATATTTTTTCTGCTCATACCAAATTCTGTCTTTGT
TATTCTGATATTGTATGCCGACTTCTAACCCAAGACATATAAAAGTAAAT
TCTCCAGAGGGAAACGATATTCTAAAAACAATCTTTCAATACTTAAACTA
TGACACTTAAACTTGAACTGTGCTGCTTTTCCTACATAGATATCTGCATT
TGGTCTCTACATACTATTGATAATAGCCACTGTTTCTACCTTGTAACCAA
GAGGGAGGATCTGTATGGTGATCTTTTCTTGGCCTTTGTGTTTCAGATGT
TCTGCATCACTGCTGTTTATCTTTTGTTTTTTTATTCTCTTTTTAAGCGA
GAAAATGAATGATATTTCATTATATCTCAGTCCCTGTAATTTTTGTGATT
GCTTTTTACCTATACTCTATCTTTTTCCTATTTATTATTTATTATTTTAT
CTCTCTAGTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_n16.g1 MSMg01no197_n16.g1 CHROMAT_FILE:
MSMg01no197_n16.g1 PHD_FILE: MSMg01no197_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:53 2005
         (245 letters)



>mm_chr4_67129229_67129873
          Length = 645

 Score =  406 bits (210), Expect = e-118
 Identities = 234/242 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtacttttctatactgtattttataatgtcctgaaggagggagaacacaccaggagttg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 442 tgtacttttctgtactgtattttataatgtcctgaaggagggagaacacaccaggagtcc 383

                                                                       
Query: 61  cacttataagacagtattaaagtattcttctaacagaatctaaccctctagaaaggttat 120
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacttgtaagacagtattaaagtgttcttctaacagaatctaaccctctagaaaggttat 323

                                                                       
Query: 121 tagtctagacttttgataaaagatcaataaggaaagatatccaacatggcgtattatgta 180
           |||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 322 tagtctagacttgtgataaaagatcaataagaaaagatatccaacatggcatattatgta 263

                                                                       
Query: 181 ggttaagaactgagacggattggggagaacataggaaagaaaaatgaagtgtgcagatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggttaagaactgagacggattggggagaacataggaaagaaaaatgaagtgtgcagatca 203

             
Query: 241 cg 242
           ||
Sbjct: 202 cg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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