BAC Information

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BAC

Clone NameMSMg01-197O04
Chromosome4 (Build37)
Map Location 18,009,801 - 18,010,141
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197O04.T7 (MSMg01no197_o04.b1)MSMg01-197O04.TJ (MSMg01no197_o04.g1)
ACCAG385437AG385438
length827719
length of high quality
(start - end)
---342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no197_o04.b1 PHD_FILE: MSMg01no197_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:55 2005CHROMAT_FILE: MSMg01no197_o04.g1 PHD_FILE: MSMg01no197_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATATAGGGTACACGCCATATATACCTACCGGCTTAAAACATCAATATA
TGCGGCGCTCTACGAAAATATTTCAGAGGACCGCCGAAAAGTGCGGGCCC
CCAATCCAAAATGAACCGGCCCCCACGTGTTTAACAAAAACCCGGCGCCT
CCCATTTATTTTCCGGATGCCCCCCCTATAAAAATTTATTTATGTAAGTA
AAAAACAAAAGACATAGGACCCAACACTTTACGTGCTTGCTCTTAGGATG
AATGAATGTAAAAAGAGATAATAGTGAGATAATGTGGCGAAAGGCGCCAA
CAGAAGGGATAGATTTAGCGCACAATATAAAATCACTTTTTTGTTTTCGC
GCCCATCCCCGCCCCGAAAAAAAGGAAGAGGGAGGGCTCGTATAAAAAAC
ACACCCGCGGGTTGTTAAAACACGAGAAAGATGGGGTGGAGGGGTGATTT
CTTAGACTTAAACATCAGAAAAAGCAGGGGGGTGGGAGGGGTCAGCGCAC
CGGAGGTGTAACAGGGGAGAAGCTAACACCCCCCCAACACCGTCAGTGGG
ACGACCCACCTAGCTCTGAACTCCCCTACGCTATTCGATGTTTTGACGCA
TCGCATGCCTGGAAGCTACCCGGAGTCGCGGCAATCAGGGGGGATGAGAG
AGGGCGCATACGCCGGCCCGGGCCGGATCCCATTTTTAGCGCCCGCGATG
GGCGTGTGTGTGGAGGGAACCGGTTCGCGCATTTTTTTTACCACTTCCCG
CATCGTGGCCAATTGGTTACGATAACCTCCGTTTACGTTATATATACCCC
CATCCCCTGCTTTTTGAATCCCCCTGN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGATATAGTAGGGTGTTATG
TTCTAGAACAGTACAGGTAAGCCCAGAGAATGTATTATAGAAGCAACAAC
ATGTAAGTAGGAAATGAACAGAAAGAAGGCATTTAATAGGGCATAGGCAA
AAGGGCATTCTCATCCAAATGAAATAGGTATACAAACAAGGACTGAAGCA
AGGGAGGAAAGAGAGGAAAATTAAAAAGAGCAGTAGAGACCCATGCAGGT
TAAGAAAGGTCCAGGAGATGGACAGTGTAGGCCCTAAGTCTAAACGTGAA
ACTAGAAAATTCTAGAAAGTCTGGGAAGAAGGCAGCTACTGCAAATATTG
AAGAAGAAAAAATATGTCCACCCCTAAGATGTAAATGGTCAATGATGAAA
TACATGTGTGCTCTAGAATGTTAGGTCAAAGTATTGCAGATAATAAAAAT
AAGTCAAATTAAGTTTCAGTTGCTAAAAAGGAAGTGAGTTACTGCAGCAT
ATTTATATAGGAAGGAAAACTTCTCCATCCTTAATCATATACTGAATTTC
ACATGCCTAGCTATGCTCATTTACAACTTTTATACTTGAGGATATGTGTT
GAATGCTTGGGTATAAACGCGACTCACAATTCCCGTTTATTTTTTCTTCG
TCAGCGGTCTATTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_o04.g1 MSMg01no197_o04.g1 CHROMAT_FILE:
MSMg01no197_o04.g1 PHD_FILE: MSMg01no197_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:55 2005
         (342 letters)



>mm_chr4_18009601_18010342
          Length = 742

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaagatatagtagggtgttatgttctagaacagtacaggtaagcccagagaatgtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 541 aagaagatatagtagggtgttatgttctagaacagtacaggtaagcaaagagaatgtatt 482

                                                                       
Query: 61  atagaagcaacaacatgtaagtaggaaatgaacagaaagaaggcatttaatagggcatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atagaagcaacaacatgtaagtaggaaatgaacagaaagaaggcatttaatagggcatag 422

                                                                       
Query: 121 gcaaaagggcattctcatccaaatgaaataggtatacaaacaaggactgaagcaagggag 180
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 421 gcaaaagggcattctcatccaaatgaaataactatacaaacaaggactgaagcaagggag 362

                                                                       
Query: 181 gaaagagaggaaaattaaaaagagcagtagagacccatgcaggttaagaaaggtccagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaagagaggaaaattaaaaagagcagtagagacccatgcaggttaagaaaggtccagga 302

                                                                       
Query: 241 gatggacagtgtaggccctaagtctaaacgtgaaactagaaaattctagaaagtctggga 300
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 301 gatggacagtgtaggccctaagtctaaacgcgaaactagaaaactctagaaagtctggga 242

                                                    
Query: 301 agaaggcagctactgcaaatattgaagaagaaaaaatatgt 341
           ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 241 agaaggcagctactgcaaatattaaagaagaaaaaatatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)