BAC Information

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BAC

Clone NameMSMg01-198N02
Chromosome4 (Build37)
Map Location 143,969,299 - 143,969,762
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
Downstream genePramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198N02.T7 (MSMg01no198_n02.b1)MSMg01-198N02.TJ (MSMg01no198_n02.g1)
ACCAG385985AG385986
length704727
length of high quality
(start - end)		477 (46 - 522)337 (77 - 413)
definitionCHROMAT_FILE: MSMg01no198_n02.b1 PHD_FILE: MSMg01no198_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:10 2005CHROMAT_FILE: MSMg01no198_n02.g1 PHD_FILE: MSMg01no198_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCCAGAGCTACATTAAGAGAGACTGTCTAAAAAATAAAATAA
AAATTTACAAAAAATCTGAGGCAAACAATTTTTTTAAAAAAATATTTATT
TTATATATGTGAGTGTACTGTTGCTGTCCTCAGACACACCATAAGAGGGT
ATCAGAACCCATTACAGATGGTTGTGAGCCACAATGTGGTTACTGGGAAT
TGAACTCAGCACCTCTGGAAGAACAGTCAGTGCTCTTAACTGCTGAGCTA
TCTCTCCAGCCCATGAGACAAACATTATTAAAGTTCTCTCTATTTGGAGC
TGAGAATGCAGTACTGCACAACTTATATGATCCTAAATTTTAAACTTCAT
ATTTTACTGAATTGGATTGTTGTTGTTATTACTGAGATGGAGGTCTCTCT
GTTGAGTTCAAGGCCAGCCTGGACTACAAAGAGAAACCCTGTGTATGTGT
GTGTGTGTGGGGGGGGGAGCCNCCTTTCCTCTCTTNTCCTCTTGCTCTAC
TCTCCTTCTATTTTTTTCTGTCTCTTCCGTCTTCGTTGCTGGTGTTTTTT
TTCTTTCATTTATTCCTTTATCCATTCCTTTACTTTCATTTCATTTTCTC
TCTTTTTTATATTATATACTACATTCTCATAACTTTTTCTCTATTTTTTT
ACTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGATCGTGGGCCCAGTGTCGTA
CTTCTCTGGCTGTGAAATGAGTTCCTTGGTCAGAAGCAATACTGTGTGGA
ATACCATGACGATAAATAAGGCATTCTGTCAGTCCATGAATGGTGGTTTT
AGCAGAGGCATTACGTGCAGGAAAGGCAAATCCATAACCAGAATAAGTAT
CTACTCCAGTAAGAACAAAACGCTGTCCTTTCCACGAAGGAAGTGGTCCA
ATGTAGTCAACCTGCCACCAGGTTGCTGGCTGGTCACCTCGAGGAATGGT
GCCATATCTGGGACTCAGTGCTGATGACTCCCCTAATGATTTTGGTAAAA
ATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTC
GCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACA
CGACTCTCTTTACCAATTCTGCCCCGAATTACACTTACAACGACTCAACA
GCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTT
ACCGAACTTGGCCGTAACCTGCCAACCTTAGCGAGAACAAAACATAACAT
CAAACGAATCGACCGATTGTTAGGTAATCGTGCCCTCCACAAAGAGCGAC
TCGCTGTATACCGTTGGCATGCTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_n02.b1 MSMg01no198_n02.b1 CHROMAT_FILE:
MSMg01no198_n02.b1 PHD_FILE: MSMg01no198_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:10 2005
         (477 letters)



>mm_chr4_143968914_143969790
          Length = 877

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/470 (98%), Gaps = 6/470 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggccagagctacattaagagagactgtctaaaaaataaaataaaaatttaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gaattccaggccagagctacattaagagagactgtctaaaaaataaaataaaaatttaca 790

                                                                       
Query: 65  aaaaatctgaggcaaacaatttttttaaaaaaatatttattttatatatgtgagtgtact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaaaatctgaggcaaacaatttttttaaaaaaatatttattttatatatgtgagtgtact 730

                                                                       
Query: 125 gttgctgtcctcagacacaccataagagggtatcagaacccattacagatggttgtgagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gttgctgtcctcagacacaccataagagggtatcagaacccattacagatggttgtgagc 670

                                                                       
Query: 185 cacaatgtggttactgggaattgaactcagcacctctggaagaacagtcagtgctcttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cacaatgtggttactgggaattgaactcagcacctctggaagaacagtcagtgctcttaa 610

                                                                       
Query: 245 ctgctgagctatctctccagcccatgagacaaacattattaaagttctctctatttggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctgctgagctatctctccagcccatgagacaaacattattaaagttctctctatttggag 550

                                                                       
Query: 305 ctgagaatgcagtactgcacaacttatatgatcctaaattttaaacttcatattttactg 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctgagaatgcagtactgcacaaattatatgatcctaaattttaaacttcatattttactg 490

                                                                       
Query: 365 aattggattgttgttgttattactgagatggaggtctctctgttgagttcaaggccagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aattggattgttgttgttattactgagatggaggtctctctgttgagttcaaggccagcc 430

                                                             
Query: 425 tggactacaaagagaaaccctgtgtatgtgtgtgtgtgtgggggggggag 474
           |||| ||||||||||||||||||||  ||||||| |   |||||||||||
Sbjct: 429 tggattacaaagagaaaccctgtgt--gtgtgtg-g---gggggggggag 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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